Target audience: Any student, postdoc or RA ... or plant researchers
This training material has been used in a two-day training workshop on data management organized by Elixir and the Wheat Initiative.
It provides an overview of current practices and methods for plant phenotyping data standardization, and how to deal with the variability and heterogeneity...
Scientific topics: Data management, Plant biology, Phenomics
Operations: Formatting, Annotation
Keywords: Plant Phenotyping, Data-format, data sharing
Resource type: Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics. It allows querying and visualising structural and functional annotations, gene families, protein domains, phylogenetic trees, and genome organization. PLAZA 4.0 is the latest iteration of the PLAZA...
Scientific topics: Plant biology, Functional genomics, Comparative genomics, Evolutionary biology, Phylogenomics, Genotype and phenotype
Operations: Annotation, Visualisation, Comparison
Keywords: plants, Plants bioinformatics, genomics, Visualisation, Annotation
Resource type: Training materials
Hands on course held at TGAC (http://www.tgac.ac.uk/) on Monday 19 to Friday 23 May 2014
What is this workshop about?
The course will combine lectures and led discussions to identify key challenges, opportunities and bottlenecks, with practical session on:
Automated and standardized data...
Scientific topics: Sequence analysis, Plant biology, Database management, Bioinformatics
Keywords: Ngs, Ngs bioinformatics, Plants bioinformatics
