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Target audience: Any student, postdoc or RA ...  or Graduate students 

The Power of Genomics to Understand the COVID-19 Pandemic

On this course, you’ll learn key concepts in viral genomics, how they can be applied to the COVID-19 pandemic, and how they can help us prepare for future pandemics.

Keywords: coronavirus, covid-19, sars-cov-2, mutations, Variant calling, Sequencing, pandemic, surveillance, genomics, public health, Genomic data

Resource type: FREE online course

The Power of Genomics to Understand the COVID-19 Pandemic http://tess.elixir-uk.org/materials/the-power-of-genomics-to-understand-the-covid-19-pandemic On this course, you’ll learn key concepts in viral genomics, how they can be applied to the COVID-19 pandemic, and how they can help us prepare for future pandemics. Our list of contributors can be found on our course page. coronavirus, covid-19, sars-cov-2, mutations, Variant calling, Sequencing, pandemic, surveillance, genomics, public health, Genomic data Policy makers journalists Graduate students undergraduate students researchers
PSLS22 Practical Statistics for the Life Sciences

This intermediate level course is one of our Foundations courses. It covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences. The course positions applied statistics, starting from important aspects of experimental design and data...

PSLS22 Practical Statistics for the Life Sciences http://tess.elixir-uk.org/materials/psls22-practical-statistics-for-the-life-sciences This intermediate level course is one of our Foundations courses. It covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences. The course positions applied statistics, starting from important aspects of experimental design and data exploration. We then move into statistical modeling and data analysis. We will focus on the link between linear regression and analysis of variance. Together, these methods contribute to the study of General Linear Models. The course also introduces the basics of non-parametric testing, and addresses categorical data analysis and logistic regression. Lieven Clement Milan Malfait Jeroen Gilis Graduate students All postgraduates
Infectious Disease Genomic Epidemiology 2018 Module 7-Data Visualization

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 7-Data Visualization http://tess.elixir-uk.org/materials/infectious-disease-genomic-epidemiology-2018-module-7-data-visualization Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Infectious Disease Genomic Epidemiology 2018 Module 6-Emerging Pathogen Detection and Identification Using Metagenomics Samples

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 6-Emerging Pathogen Detection and Identification Using Metagenomics Samples http://tess.elixir-uk.org/materials/infectious-disease-genomic-epidemiology-2018-module-6-emerging-pathogen-detection-and-identification-using-metagenomics-samples Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Infectious Disease Genomic Epidemiology 2018 Module 5-Phylogeographic Analysis

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 5-Phylogeographic Analysis http://tess.elixir-uk.org/materials/infectious-disease-genomic-epidemiology-2018-module-5-phylogeographic-analysis Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Infectious Disease Genomic Epidemiology 2018 Module 4-Antimicrobial Resistance Genes

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 4-Antimicrobial Resistance Genes http://tess.elixir-uk.org/materials/infectious-disease-genomic-epidemiology-2018-module-4-antimicrobial-resistance-genes Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Infectious Disease Genomic Epidemiology 2018 Module 2-Pathogen Genomic Analysis 1

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 2-Pathogen Genomic Analysis 1 http://tess.elixir-uk.org/materials/infectious-disease-genomic-epidemiology-2018-module-2-pathogen-genomic-analysis-1 Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Infectious Disease Genomic Epidemiology 2018 Module 1-Introduction to Public Health Microbiology and Genomic Epidemiology

Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.

Infectious Disease Genomic Epidemiology 2018 Module 1-Introduction to Public Health Microbiology and Genomic Epidemiology http://tess.elixir-uk.org/materials/infectious-disease-genomic-epidemiology-2018-module-1-introduction-to-public-health-microbiology-and-genomic-epidemiology Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Pathways and Network Analysis of -Omics data 2018 Module 6-Regulatory Network Analysis

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics data 2018 Module 6-Regulatory Network Analysis http://tess.elixir-uk.org/materials/pathways-and-network-analysis-of-omics-data-2018-module-6-regulatory-network-analysis Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Pathways and Network Analysis of -Omics data 2018 Module 5-Gene Function Prediction

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics data 2018 Module 5-Gene Function Prediction http://tess.elixir-uk.org/materials/pathways-and-network-analysis-of-omics-data-2018-module-5-gene-function-prediction Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Pathways and Network Analysis of -Omics data 2018 Module 3-Network Visualization and Analysis with Cytoscape

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics data 2018 Module 3-Network Visualization and Analysis with Cytoscape http://tess.elixir-uk.org/materials/pathways-and-network-analysis-of-omics-data-2018-module-3-network-visualization-and-analysis-with-cytoscape Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Pathways and Network Analysis of -Omics Data 2018 Module 2-Finding Over-Represented Pathways

Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.

Pathways and Network Analysis of -Omics Data 2018 Module 2-Finding Over-Represented Pathways http://tess.elixir-uk.org/materials/pathways-and-network-analysis-of-omics-data-2018-module-2-finding-over-represented-pathways Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Epigenomic Data Analysis 2018 Module 2-ChIP-Seq Alignment, Peak Calling, and Visualization

Course providing an introduction to histone ChiP-Seq and WGBS data analysis followed by integrated tutorials demonstrating the use of open source ChiP-Seq and WGBS analysis packages.

Epigenomic Data Analysis 2018 Module 2-ChIP-Seq Alignment, Peak Calling, and Visualization http://tess.elixir-uk.org/materials/epigenomic-data-analysis-2018-module-2-chip-seq-alignment-peak-calling-and-visualization Course providing an introduction to histone ChiP-Seq and WGBS data analysis followed by integrated tutorials demonstrating the use of open source ChiP-Seq and WGBS analysis packages. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers http://tess.elixir-uk.org/materials/bioinformatics-of-genomic-medicine-2018-module-7-identifying-integrative-subtypes-and-building-classifiers Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Bioinformatics of Genomic Medicine 2018 Module 5-Available Epigenetics Data and Resources

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 5-Available Epigenetics Data and Resources http://tess.elixir-uk.org/materials/bioinformatics-of-genomic-medicine-2018-module-5-available-epigenetics-data-and-resources Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Bioinformatics of Genomic Medicine 2018 Module 4-Translating Research Workflows into Clinical Tests

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 4-Translating Research Workflows into Clinical Tests http://tess.elixir-uk.org/materials/bioinformatic-of-genomic-medicine-2018-module-4-translating-research-workflows-into-clinical-tests Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Bioinformatics of Genomic Medicine 2018 Module 2-Introduction to Tools, Computing Infrastructure, and Data

Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field.

Bioinformatics of Genomic Medicine 2018 Module 2-Introduction to Tools, Computing Infrastructure, and Data http://tess.elixir-uk.org/materials/bioinformatics-of-genomic-medicine-2018-module-2-introduction-to-tools-computing-infrastructure-and-data Course will explore various aspects of genomic medicine, covering and teaching popular tools and methods in the field. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics and Statistics for Metabolomics 2018 Module 6-Future of Metabolomics

Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases.

Informatics and Statistics for Metabolomics 2018 Module 6-Future of Metabolomics http://tess.elixir-uk.org/materials/informatics-and-statistics-for-metabolomics-2018-module-6-future-of-metabolomics Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Informatics and Statistics for Metabolomics 2018 Module 2-Metabolite Identification and Annotation

Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases.

Informatics and Statistics for Metabolomics 2018 Module 2-Metabolite Identification and Annotation http://tess.elixir-uk.org/materials/informatics-and-statistics-for-metabolomics-2018-module-2-metabolite-identification-and-annotation Course covers many topics ranging from understanding metabolomics technologies, data collection and analysis, using pathway databases, performing pathway analysis, conducting univariate and multivariate statistics, working with metabolomics databases, and exploring chemical databases. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Analysis of Metagenomic Data 2018 Module 5-Pulling Genomes from Metagenomes

Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools.

Analysis of Metagenomic Data 2018 Module 5-Pulling Genomes from Metagenomes http://tess.elixir-uk.org/materials/analysis-of-metagenomic-data-2018-module-5-pulling-genomes-from-metagenomes Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Analysis of Metagenomic Data 2018 Module 4-Metagenomic Taxonomic and Functional Composition

Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools.

Analysis of Metagenomic Data 2018 Module 4-Metagenomic Taxonomic and Functional Composition http://tess.elixir-uk.org/materials/analysis-of-metagenomic-data-2018-module-4-metagenomic-taxonomic-and-functional-composition Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Analysis of Metagenomic Data 2018 Module 3-PICRUSt

Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools.

Analysis of Metagenomic Data 2018 Module 3-PICRUSt http://tess.elixir-uk.org/materials/analysis-of-metagenomic-data-2018-module-3-picrust Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools. Researchers Post-Doctoral Fellows Graduate students Biologists, Genomicists, Computer Scientists
Analysis of Metagenomic Data 2018 Module 2-Marker Gene-Based Analysis

Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools.

Analysis of Metagenomic Data 2018 Module 2-Marker Gene-Based Analysis http://tess.elixir-uk.org/materials/analysis-of-metagenomic-data-2018-module-2-marker-gene-based-analysis Course providing an introduction to metagenomic data analysis followed by hands-on practical tutorials demonstrating the use of metagenome analysis tools. Researchers Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists
Informatics for RNA-Seq Analysis 2018 Module 5-Genome Guided and Genome-free Transcriptome Assembly

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2018 Module 5-Genome Guided and Genome-free Transcriptome Assembly http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2018-module-5-genome-guided-and-genome-free-transcriptome-assembly Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate students
Informatics for RNA-Seq Analysis 2018 Module 1-Introduction to RNA Sequencing Analysis

Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.

Informatics for RNA-Seq Analysis 2018 Module 1-Introduction to RNA Sequencing Analysis http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2018-module-1-introduction-to-rna-sequencing-analysis Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages. Researchers Biologists, Genomicists, Computer Scientists Graduate students Post-Doctoral Fellows
Informatics on High-Throughput Sequencing Data 2018 Module 6-De Novo Assmebly

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 6-De Novo Assmebly http://tess.elixir-uk.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-6-de-novo-assmebly Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate students
Informatics on High-Throughput Sequencing Data 2018 Module 5-Structural Variant Calling

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 5-Structural Variant Calling http://tess.elixir-uk.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-5-structural-variant-calling Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows
Informatics on High-Throughput Sequencing Data 2018 Module 4-Small-Variant Calling and Annotation

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 4-Small-Variant Calling and Annotation http://tess.elixir-uk.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-4-small-variant-calling-and-annotation Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Researchers Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Graduate students
Informatics on High-Throughput Sequencing Data 2018 Module 3-Genome Alignment

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 3-Genome Alignment http://tess.elixir-uk.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-3-genome-alignment Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Graduate students Post-Doctoral Fellows Biologists, Genomicists, Computer Scientists Researchers
Informatics on High-Throughput Sequencing Data 2018 Module 2-Data Visualization

Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads.

Informatics on High-Throughput Sequencing Data 2018 Module 2-Data Visualization http://tess.elixir-uk.org/materials/informatics-on-high-throughput-sequencing-data-2018-module-2-data-visualization Course covers the bioinformatics tools available for managing and interpreting high-throughput sequencing data, where the focus is on Illumina reads although information is applicable to all sequencer reads. Researchers Graduate students Biologists, Genomicists, Computer Scientists Post-Doctoral Fellows