Standard database or policy: Protein Data Bank in Europe or NCBI Gene
PDBe: Searching for biological macromolecular structures from http://www.ebi.ac.uk/training/online/course/pdbe-searching-biological-macromolecular-structure.
Keywords: Proteins, Chemical biology, Structures
Functional association networks and gene function prediction
Homology based prediction
Guilt-by-association: GeneMANIA
Keywords: Functional association networks, Gene function prediction, Genemania
Overview of transcription
Data sources for regulatory data - Chromatin IP, DNA hypersensitivity, other chip data
Basics of processing data
Pattern discovery
Keywords: Pattern discovery, Transcriptional regulation
Gene list analysis overview: Workflow of concepts and tools from gene list to pathway analysis
Where do gene lists come from?
Working with gene function information
Keywords: Gene lists, Gene ontology
This presentation examines the available in silico tools for protein structure and function prediction. It examines the major protein family databases (PROSITE, PRINTS, Pfam, etc.), and explores why tools like PSI-BLAST, while convenient and easy to use, may not always give optimal results. The...
Keywords: Expert systems, Genequiz, Protein family characterisation, Protein family databases, Protein sequence analysis, Psi blast
PDBe: Searching the Protein Data Bank from http://www.ebi.ac.uk/training/online/course/pdbe-searching-protein-data-bank.
Keywords: Proteins, Chemical biology, Structures
PDBe: Quick tour from http://www.ebi.ac.uk/training/online/course/pdbe-quick-tour.
Keywords: Proteins, Structures
PDBe: Exploring a Protein Data Bank (PDB) entry from http://www.ebi.ac.uk/training/online/course/pdbe-exploring-protein-data-bank-pdb-entry.
Keywords: Proteins, Chemical biology, Structures
PDBe: An introduction to search and entry pages: webinar from http://www.ebi.ac.uk/training/online/course/pdbe-introduction-search-and-entry-pages-webinar.
Keywords: Proteins, Chemical biology, Structures