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Standard database or policy: NCBI Gene  or Minimum Information about P... 


Plant Phenotyping Data managment Webinar (MIAPPE)

The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking...

Scientific topics: Plant biology, Phenomics, Data quality management, Data submission, annotation, and curation

Operations: Standardisation and normalisation

Resource type: Video, Slides

Plant Phenotyping Data managment (MIAPPE)

This training material has been used in a two-day training workshop on data management organized by Elixir and the Wheat Initiative.

It provides an overview of current practices and methods for plant phenotyping data standardization, and how to deal with the variability and heterogeneity...

Scientific topics: Phenomics, Plant biology, Data management

Operations: Annotation, Formatting

Keywords: Plant Phenotyping, Data-format, data sharing

Resource type: Training materials

Pathway and Network Analysis 2014 Module 6 - Gene Function Prediction

Functional association networks and gene function prediction

    Homology based prediction

    Guilt-by-association: GeneMANIA

Keywords: Functional association networks, Gene function prediction, Genemania

Pathway and Network Analysis 2014 Module 3 - Gene Regulation Analysis

Overview of transcription

    Data sources for regulatory data - Chromatin IP, DNA hypersensitivity, other chip data

    Basics of processing data

    Pattern discovery

Keywords: Pattern discovery, Transcriptional regulation

Pathway and Network Analysis 2014 Module 1 - Introduction to Gene Lists

Gene list analysis overview: Workflow of concepts and tools from gene list to pathway analysis

    Where do gene lists come from?

    Working with gene function information

Keywords: Gene lists, Gene ontology

Bioinformatics: Gene-protein-structure-function

This presentation examines the available in silico tools for protein structure and function prediction. It examines the major protein family databases (PROSITE, PRINTS, Pfam, etc.), and explores why tools like PSI-BLAST, while convenient and easy to use, may not always give optimal results. The...

Keywords: Expert systems, Genequiz, Protein family characterisation, Protein family databases, Protein sequence analysis, Psi blast