Scientific topics: Toxicology or Ontology and terminology
Expanding the SPHN RDF Schema is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science
Operations: Editing, Ontology visualisation, Visualisation, Data handling
Keywords: Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL
Resource type: Video, Training materials, E-learning
The RDF and SPARQL training primer was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Ontology and terminology
Operations: Query and retrieval, Database search, Data handling, Data retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology
Resource type: Video, Training materials, E-learning
This video was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and serves as an introduction to the main standards used within the [SPHN Interoperability...
Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science
Operations: Standardisation and normalisation, Data handling
Keywords: Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD
Resource type: Video, Training materials, E-learning
This video explains why we need data standardization and how to annotate data using next generation biobanking ontology (NGBO).
This video is part of the CINECA online training series, where you can learn about concepts and tools relevant to federated analysis of cohort data.
Scientific topics: Ontology and terminology, Data integration and warehousing
Keywords: Standards, Ontologies, Data Integration, data harmonization, Standardised vocabulary
Resource type: Video
This video describes a community of practice for interoperable ontology building called the OBO Foundry, and highlights a number of well curated and maintained ontologies that are useful for annotating cohort data.
The video is aimed at anyone interested in data standardization and/or the...
Scientific topics: Ontology and terminology, Data management, Data integration and warehousing
Keywords: Ontologies, Cohort data, data annotation
Resource type: Video
This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems.
Scientific topics: Ontology and terminology, Data integration and warehousing, Data management
Keywords: Ontologies, Annotation, Data integration
Resource type: Video
Ontologies are collections of well-defined, hierarchical, controlled vocabulary, linked by logical relationships. This video introduces the concept and benefits of implementing ontologies for solving data integration issues when data is generated by different research groups.
Scientific topics: Data management, Data integration and warehousing, Ontology and terminology
Keywords: Ontologies, Data integration, Annotation
Resource type: Video
This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data.
The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators...
Scientific topics: Ontology and terminology, Data submission, annotation, and curation, Data management
Keywords: CINECA, data harmonization, Annotation, Ontologies
Resource type: Video
bio.tools provides essential scientific and technical information about software tools, databases and services for bioinformatics and the life sciences.
Some notable bio.tools documentation links:
- About bio.tools
- [Installing bio.tools on your...
Scientific topics: Ontology and terminology, Computational biology, Data submission, annotation, and curation, Bioinformatics
Operations: Data retrieval
Keywords: Tools, Curation, Software, Sofware curation, Tool curation
Resource type: Documentation, API reference
Workshop of 1.5h where the eNanoMapper ontology and a few uses are discussed. The exercises walk the audience trough the principles, uses, and demonstrates how they can actively work with the ontology.
Scientific topics: Ontology and terminology, Toxicology
Resource type: Tutorial
This tutorial describes how nanomaterial data can be added to an eNanoMapper server using a RDF format.
Scientific topics: Database management, Toxicology
Keywords: nanotoxicology, enanomapper, resource description framework, ontology
Resource type: Tutorial
The Ontology Lookup Service (OLS) provides access to over 150 public biomedical ontologies. You can use OLS to search and visualise ontologies, and an API is also provided for programmatic access. Ontologies provide standard terminology for describing data that help us integrate and analyse data....
Scientific topics: Ontology and terminology
Resource type: Webinar
