WORKSHOP: Variant calling in humans, animals and plants with Galaxy
This Zenodo record includes training materials associated with the Australian BioCommons workshop ‘Variant calling in humans, animals and plants with Galaxy’. This workshop took place on 25 May 2021.
Scientific topics: Genetic variation
Keywords: Variant calling
WORKSHOP: Variant calling in humans, animals and plants with Galaxy
https://zenodo.org/record/5076668#.YQN9gFMzY3Q
http://tess.elixir-uk.org/materials/workshop-variant-calling-in-humans-animals-and-plants-with-galaxy
This Zenodo record includes training materials associated with the Australian BioCommons workshop ‘Variant calling in humans, animals and plants with Galaxy’. This workshop took place on 25 May 2021.
Genetic variation
Variant calling
How to use V-pipe (SARS-CoV-2 data)
How to use V-pipe bioinformatics virus NGS Pipeline - (specifically for SARS-CoV-2 data)
Scientific topics: Workflows, Genetic variation, Virology
Operations: Read pre-processing, Alignment, Variant calling
Keywords: coronavirus, NGS bioinformatics, Variant-calling
Resource type: Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
https://cbg-ethz.github.io/V-pipe/tutorial/sars-cov2/
http://tess.elixir-uk.org/materials/how-to-use-v-pipe-sars-cov-2-data
How to use V-pipe bioinformatics virus NGS Pipeline - (specifically for SARS-CoV-2 data)
Ivan Topolsky
Workflows
Genetic variation
Virology
coronavirus, NGS bioinformatics, Variant-calling
bioinformaticians
Biologists, Genomicists, Computer Scientists
OpenRiskNet: Ontology Walkthrough and Workshop
Workshop of 1.5h where the eNanoMapper ontology and a few uses are discussed. The exercises walk the audience trough the principles, uses, and demonstrates how they can actively work with the ontology.
Scientific topics: Ontology and terminology, Toxicology
Resource type: Tutorial
OpenRiskNet: Ontology Walkthrough and Workshop
https://openrisknet.github.io/workshop/OntologyWorkshop/
http://tess.elixir-uk.org/materials/openrisknet-ontology-walkthrough-and-workshop
Workshop of 1.5h where the eNanoMapper ontology and a few uses are discussed. The exercises walk the audience trough the principles, uses, and demonstrates how they can actively work with the ontology.
Egon Willighagen
Ontology and terminology
Toxicology
Biologists
bioinformaticians
Chemists
Adding nanomaterial data
This tutorial describes how nanomaterial data can be added to an eNanoMapper server using a RDF format.
Scientific topics: Database management, Toxicology
Keywords: nanotoxicology, enanomapper, resource description framework, ontology
Resource type: Tutorial
Adding nanomaterial data
https://nanocommons.github.io/tutorials/enteringData/
http://tess.elixir-uk.org/materials/adding-nanomaterial-data
This tutorial describes how nanomaterial data can be added to an eNanoMapper server using a RDF format.
Egon Willighagen
Database management
Toxicology
nanotoxicology, enanomapper, resource description framework, ontology
programmers
data entering
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping.
Scientific topics: Genomics, Genetic variation
Keywords: ELIXIR RIR, BridgeDb
Resource type: Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
https://bigcat-um.github.io/BridgeDbVariantDatabase/Local_BridgeDb_IMS_installation.html
http://tess.elixir-uk.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping.
Friederike Ehrhart
Jonathan Mélius
Egon Willighagen
Genomics
Genetic variation
ELIXIR RIR, BridgeDb
Biologists
