Text-mining exercises
Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.
Scientific topics: Data mining, Natural language processing, Metagenomics, Microbial ecology
Text-mining exercises
http://jensenlab.org/training/textmining/
http://tess.elixir-uk.org/materials/text-mining-exercises
Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.
Evangelos Pafilis
Lars Juhl Jensen
Manimozhiyan Arumugam
Data mining
Natural language processing
Metagenomics
Microbial ecology
Bioinformaticians
Biologists
Analysing Mapped Sequence Data with SeqMonk
SeqMonk is a program which can analyse large data sets of mapped genomic positions. It is most commonly used to work with data coming from high-throughput sequencing pipelines.
The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let...
Scientific topics: Sequence alignment
Keywords: Babraham Institute
Analysing Mapped Sequence Data with SeqMonk
http://www.bioinformatics.babraham.ac.uk/training.html#seqmonk
http://tess.elixir-uk.org/materials/analysing-mapped-sequence-data-with-seqmonk
SeqMonk is a program which can analyse large data sets of mapped genomic positions. It is most commonly used to work with data coming from high-throughput sequencing pipelines.
The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analysis very large datasets.
This course provides an introduction to the main features of SeqMonk and will run through the anlaysis of a couple of different datasets to show what sort of analysis options it provides.
Simon Andrews
Sequence alignment
Babraham Institute
