Register training material
3 materials found

Scientific topics: Natural language processing  or Quality affairs 


Text-mining exercises

Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.

The exercises will teach you how to:

  • automatically highlight named entities in a web page
  • use named entity recognition for synonym-aware...

Scientific topics: Data mining, Natural language processing, Metagenomics, Microbial ecology

Quality Control in Sequencing Experiments

This course looks at the different ways in which sequencing based studies can fail and the options for visualisation and QC which allow you to identify and diagnose these failures at an early stage. It is designed to be of use to anyone who is using sequencing as part of their research, not just...

Scientific topics: Quality affairs

Keywords: Babraham Institute

QC or not QC Data is the question

Sequence processing Issues

General sequence quality

  • 5’ base bias
  • 3’ quality decline

Library diversity

  • Low complexity sequence
  • Over-amplification

Contamination

  • Intrinsic to sample?
  • Cross contamination? *...

Scientific topics: Quality affairs

Keywords: IBERS, Institute of Biological, Environmental and Rural Sciences