Register training material
12 materials found

Scientific topics: Drug discovery  or Metagenomics 

and

Target audience: postdocs  or Students 


Hands-on for 'Assembly of metagenomic sequencing data' tutorial

The questions this addresses are:
- Why metagenomic data should be assembled?
- What is the difference between co-assembly and individual assembly?
- What is the difference between reads, contigs and scaffolds?
- How tools based on De Bruijn graph work?
- How to assess the quality of...

Scientific topics: Metagenomics

Keywords: assembly, assembly, metagenomics

Resource type: hands-on tutorial

Hands-on for 'Identification of the micro-organisms in a beer using Nanopore sequencing' tutorial

The questions this addresses are:
- How can yeast strains in a beer sample be identified?
- How can we process metagenomic data sequenced using Nanopore?

The objectives are:
- Inspect metagenomics data
- Run metagenomics tools
- Identify yeast species contained in a sequenced beer sample...

Scientific topics: Metagenomics

Keywords: metagenomics, nanopore, beer, citizen science, metagenomics

Resource type: hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

The objectives are:
- Choose the best approach to analyze metatranscriptomics data
-...

Scientific topics: Metagenomics

Keywords: metagenomics, metatranscriptomics

Resource type: hands-on tutorial

Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial

The questions this addresses are:
- What is the effect of normal variation in the gut microbiome on host health?

The objectives are:
- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
- Using a mock community to assess the error rate of your sequencing experiment
-...

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: hands-on tutorial

Hands-on for 'Antibiotic resistance detection' tutorial

The questions this addresses are:
- How do I assemble a genome with Nanopore data?
- How do I get more information about the structure of the genomes?
- How do I get more information about the antimicrobial resistance genes?

The objectives are:
- Perform Quality control on your reads
-...

Scientific topics: Metagenomics

Keywords: metagenomics, nanopore, plasmids, assembly, amr

Resource type: hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?"
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

The objectives are:
- Choose the best approach to analyze metatranscriptomics data
...

Scientific topics: Metagenomics

Keywords: metagenomics, metatranscriptomics

Resource type: hands-on tutorial

Hands-on for 'Analyses of metagenomics data - The global picture' tutorial

The questions this addresses are:
- How to analyze metagenomics data?
- What information can be extracted of metagenomics data?
- What is the difference between amplicon and shotgun data?
- What are the difference in the analyses of amplicon and shotgun data?

The objectives are:
-...

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: hands-on tutorial

Hands-on for '16S Microbial Analysis with mothur (short)' tutorial

The questions this addresses are:
- What is the effect of normal variation in the gut microbiome on host health?

The objectives are:
- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
- Using a mock community to assess the error rate of your sequencing experiment
-...

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: hands-on tutorial

Hands-on for '16S Microbial analysis with Nanopore data' tutorial

The questions this addresses are:
- How can we analyse the health status of the soil?
- How do plants modify the composition of microbial communities?

The objectives are:
- Use Nanopore data for studying soil metagenomics
- Analyze and preprocess Nanopore reads
- Use Kraken2 to assign a...

Scientific topics: Metagenomics

Keywords: metagenomics, nanopore

Resource type: hands-on tutorial

Slides for 'Introduction to metatranscriptomics' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

Scientific topics: Metagenomics

Keywords: metagenomics

Resource type: slides

Introduction to 'Metagenomics'

Slides for Metagenomics

Scientific topics: Metagenomics

Resource type: slides

TGAC Metagenomics: From bench to data analysis

This course took place at TGAC on 8-12 September 2014
What is the workshop about?
A substantial part of the course will be devoted to bioinformatics resources and tools relevant in metagenomics data analysis. Participants will start at the bench and end in front of the computers for a problem...

Scientific topics: Metagenomics

Keywords: Metagenomics