Scientific topics: Drug discovery or Metagenomics
The questions this addresses are:
- How to analyze metatranscriptomics data?
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?
\nThe objectives are:
- Choose the best approach to analyze metatranscriptomics data
...
The questions this addresses are:
- What is the effect of normal variation in the gut microbiome on host health?
\nThe objectives are:
- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
- Using a mock community to assess the error rate of your sequencing experiment
-...
The questions this addresses are:
- How to analyze metatranscriptomics data?"
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?
\nThe objectives are:
- Choose the best approach to analyze metatranscriptomics data
...
The questions this addresses are:
- How do I assemble a genome with Nanopore data?
- How do I get more information about the structure of the genomes?
- How do I get more information about the antimicrobial resistance genes?
\nThe objectives are:
- Perform Quality control on your reads
-...
The questions this addresses are:
- How to analyze metagenomics data?
- What information can be extracted of metagenomics data?
- What is the difference between amplicon and shotgun data?
- What are the difference in the analyses of amplicon and shotgun data?
\nThe objectives are:
-...
The questions this addresses are:
- What is the effect of normal variation in the gut microbiome on host health?
\nThe objectives are:
- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
- Using a mock community to assess the error rate of your sequencing experiment
-...
The questions this addresses are:
- How can we analyse the health status of the soil?
- How do plants modify the composition of microbial communities?
\nThe objectives are:
- Use Nanopore data for studying soil metagenomics
- Analyze and preprocess Nanopore reads
- Use Kraken2 to assign a...
This quick tour provides a brief introduction to MGnify - a free resource for analysis, visualisation and discovery of microbiome (metagenomic, metatranscriptomic, amplicon and assembly) datasets.
This course is suitable those with an undergraduate degree in a life science subject would be an...
Metagenomics, the genomic analysis of microbial communities from samples like water and soil, involves high throughput sequencing of the microbial DNA, collecting, archiving and resharing the genomic data for taxonomic and functional analysis.
This course covers the use of publicly available...
EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets...
The International Union of Basic and Clinical Pharmacology (IUPHAR) / British Pharmacological Society (BPS) Guide to PHARMACOLOGY is an expert-curated resource of ligand-activity-target relationships, the majority of which come from high-quality pharmacological and medicinal chemistry literature....
Scientific topics: Drug discovery, Pharmacology
Resource type: PDF
Materials from the ELIXIR workshop “Hands-on workshop in Marine Metagenomics”, Nov 26-30 2018 at the Arctic University of Norway, Tromso, Norway
Metagenomics investigates the composition and function of microbial communities in different environments based on direct isolation of genetic material. It has been accelerated by the advances in high-throughput sequencing technologies, and the increasing data sizes require efficient analysis...
Hands-on exercises using a variety of text-mining tools and databases based on text mining, to interpret the results from microbiome studies.
The exercises will teach you how to:
- automatically highlight named entities in a web page
- use named entity recognition for synonym-aware...
This course took place at TGAC on 8-12 September 2014
What is the workshop about?
A substantial part of the course will be devoted to bioinformatics resources and tools relevant in metagenomics data analysis. Participants will start at the bench and end in front of the computers for a problem...
EBI Metagenomics portal: Quick tour from http://www.ebi.ac.uk/training/online/course/ebi-metagenomics-portal-quick-tour.