Register training material
42 materials found

Resource type: Webinar 


Biomedicine, supercomputers and simulations: in silico experiments and its applications in cancer research

Computational simulations of cellular processes (e.g. metabolism, gene expression, signal transduction) are critical tools to formulate mechanistic explanations that facilitate the interpretation of experimental results. However, complex biological processes such as tumour evolution span across...

Scientific topics: Molecular interactions, pathways and networks, Personalised medicine, Simulation experiment

Operations: Modelling and simulation

Keywords: HPC, Biomodelling, cell simulations

Resource type: Webinar

Biomedicine, supercomputers and simulations: in silico experiments and its applications in cancer research http://tess.elixir-uk.org/materials/biomedicine-supercomputers-and-simulations-in-silico-experiments-and-its-applications-in-cancer-research Computational simulations of cellular processes (e.g. metabolism, gene expression, signal transduction) are critical tools to formulate mechanistic explanations that facilitate the interpretation of experimental results. However, complex biological processes such as tumour evolution span across different time-space scales. For instance, a population-level description is needed to account for genetic heterogeneity and phenotypic variability due to environmental noise, whereas intracellular models, such as cell signalling networks need to address the effect of mutated genes. In this context, multi-scale models are ideal tools to address systems biology questions as they can consider several time-space scales by combining different approaches into a hybrid simulation. PhysiCell is an open-source, agent-based extensible multi-scale modelling framework that allows simulating complex multicellular systems such as healthy tissues and tumours. Molecular interactions, pathways and networks Personalised medicine Simulation experiment HPC, Biomodelling, cell simulations Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities
Introduction to qualitative modelling with MaBoSS

Boolean modelling uses a simple representation of biological entities as either active or inactive, and describes their relations with logical formulas. MaBoSS extends Boolean modelling by adding a notion of continuous time, with the introduction of rates of (in)activation. This enable the...

Scientific topics: Statistics and probability, Molecular interactions, pathways and networks, Personalised medicine, Simulation experiment

Operations: Modelling and simulation

Keywords: HPC, Biomodelling, cell simulations, Boolean

Resource type: Webinar

Introduction to qualitative modelling with MaBoSS http://tess.elixir-uk.org/materials/introduction-to-qualitative-modelling-with-maboss Boolean modelling uses a simple representation of biological entities as either active or inactive, and describes their relations with logical formulas. MaBoSS extends Boolean modelling by adding a notion of continuous time, with the introduction of rates of (in)activation. This enable the representation of physical time, and of processes with different time scales. MaBoSS simulate multiple stochastic trajectories, and produces trajectories of the probabilities of the system state. This webinar will introduce the concepts of boolean modelling, and MaBoSS’ continuous time boolean modelling, and will then demonstrate the use of WebMaBoSS, a web interface designed for easily simulating MaBoSS models. Statistics and probability Molecular interactions, pathways and networks Personalised medicine Simulation experiment HPC, Biomodelling, cell simulations, Boolean Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities
Analysis of huge metabolic models with COBREXA.jl

COBREXA.jl is a new software package to enable the analysis and simulation of large metabolic models by taking advantages of modern HPC infrastructure. Mainly, it advanced the scalability of constraint-based method, using the Julia programing language and its mathematic ecosystem as a base...

Scientific topics: Simulation experiment

Keywords: cell-level simulations, HPC, Biomodelling

Resource type: Webinar

Analysis of huge metabolic models with COBREXA.jl http://tess.elixir-uk.org/materials/analysis-of-huge-metabolic-models-with-cobrexa-jl COBREXA.jl is a new software package to enable the analysis and simulation of large metabolic models by taking advantages of modern HPC infrastructure. Mainly, it advanced the scalability of constraint-based method, using the Julia programing language and its mathematic ecosystem as a base building block. We will talk about the problems that motivated the development of COBREXA.jl and show several of its main applications. Simulation experiment cell-level simulations, HPC, Biomodelling Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities
Introduction to PerMedCoE: Exascale-ready cell-level simulations for European Personalised Medicine

PerMedCoE is the HPC/Exascale Centre of Excellence for Personalised Medicine in Europe. The goal of PerMedCoE is to provide an efficient and sustainable entry point to the HPC/Exascale-upgraded methodology to translate omics analyses into actionable models of cellular functions of medical relevance.

Scientific topics: Personalised medicine

Keywords: HPC, Biomodelling, cell-level simulations

Resource type: Webinar

Introduction to PerMedCoE: Exascale-ready cell-level simulations for European Personalised Medicine http://tess.elixir-uk.org/materials/introduction-to-permedcoe-exascale-ready-cell-level-simulations-for-european-personalised-medicine PerMedCoE is the HPC/Exascale Centre of Excellence for Personalised Medicine in Europe. The goal of PerMedCoE is to provide an efficient and sustainable entry point to the HPC/Exascale-upgraded methodology to translate omics analyses into actionable models of cellular functions of medical relevance. Personalised medicine HPC, Biomodelling, cell-level simulations Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities
ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard

This short presentation was presented as part of the Friday Coffee presentation series organized by the ELIXIR CZ infrastructure and offered students a basic insight into data management and data management plans, which are important (not only) for the success of scientific projects, but...

Scientific topics: Data management

Keywords: data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar

ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard http://tess.elixir-uk.org/materials/elixir-cz-friday-coffee-5-data-management-with-data-stewardship-wizard This short presentation was presented as part of the Friday Coffee presentation series organized by the ELIXIR CZ infrastructure and offered students a basic insight into data management and data management plans, which are important (not only) for the success of scientific projects, but increasingly for grant applications as well. The presentation also introduced students to the possibility of creating these plans using the [Data Stewardship Wizard](https://ds-wizard.org), a tool that creates the data management plan by filling out a simple, synoptic questionnaire. It offers a simple and very effective solution without the need for deep knowledge of data stewardship or data management. Video available [here](https://www.youtube.com/watch?v=2YGrVGa9JYY). Data management data management plan, data stewardship, FAIR, data management, software tools Researchers data managers data stewards
A Gentle Introduction to DSW for Convergers

[Data Stewardship Wizard](https://ds-wizard.org) brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...

Scientific topics: Data governance, Data management

Keywords: Data managment plan, data stewardship, data management, software tools

Resource type: Video, Slides, Webinar

A Gentle Introduction to DSW for Convergers http://tess.elixir-uk.org/materials/a-gentle-introduction-to-dsw-for-convergers [Data Stewardship Wizard](https://ds-wizard.org) brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart questionnaires filled by researchers. They can then export their answers to human-readable documents following the well-known templates such as Science Europe or Horizon 2020; or machine-actionable files for further processing. Data governance Data management Data managment plan, data stewardship, data management, software tools data managers Researchers data stewards
DSW Template Development Kit: The Tutorial

[Data Stewardship Wizard](ds-wizard.org) is a flexible questionnaire-based tool that uses Jinja2 templates to produce documents. It allows creating documents in practically any textual format. Such documents can be intended for both humans (HTML, Markdown, reStructuredText, etc.) and machines...

Scientific topics: Data management

Keywords: data stewardship, data management plan, FAIR, data management, software tools, DMP templates, template development

Resource type: Video, Slides, Webinar

DSW Template Development Kit: The Tutorial http://tess.elixir-uk.org/materials/dsw-template-development-kit-the-tutorial [Data Stewardship Wizard](ds-wizard.org) is a flexible questionnaire-based tool that uses Jinja2 templates to produce documents. It allows creating documents in practically any textual format. Such documents can be intended for both humans (HTML, Markdown, reStructuredText, etc.) and machines (e.g. RDF, YAML, or JSON). Our Template Development Kit (DSW TDK) is a command-line tool to make the work on templates efficient. Data management data stewardship, data management plan, FAIR, data management, software tools, DMP templates, template development data stewards data managers
Educational webinars on rare endocrine conditions (ENDO-ERN)

Various webinar on rare endocrine conditions

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Educational webinars on rare endocrine conditions (ENDO-ERN) http://tess.elixir-uk.org/materials/endo-ern-educational-webinars Various webinar on rare endocrine conditions Rare diseases Rare Diseases & Research Clinical Scientists Biomedical researchers healthcare professionals
Educational webinars on rare and complex epilepsies (EpiCARE ERN)

Free online seminars on Thursdays related to rare epilepsies

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Educational webinars on rare and complex epilepsies (EpiCARE ERN) http://tess.elixir-uk.org/materials/epicare-ern-educational-webinars Free online seminars on Thursdays related to rare epilepsies Rare diseases Rare Diseases & Research Health Care Professionals health professionals Biomedical researchers
Postgraduate Curriculum in Rare Kidney Diseases developed by ERKNet

ERKNet Postgraduate Curriculum in Rare Kidney Diseases / ESPN – IPNA Curriculum in Pediatric Nephrology

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Postgraduate Curriculum in Rare Kidney Diseases developed by ERKNet http://tess.elixir-uk.org/materials/erknet-education-and-training ERKNet Postgraduate Curriculum in Rare Kidney Diseases / ESPN – IPNA Curriculum in Pediatric Nephrology Rare diseases Rare Diseases & Research
Webinars from the European Reference Network in Rare Hematological Diseases (EuroBloodNet)

The aim of these educational activities is to promote the interest on very innovative topics in order to stress among health professionals the cutting-edge advances in the field of Rare Hematological Diseases. One or 2 webinars per month, each of them lasting 45 minutes.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Webinars from the European Reference Network in Rare Hematological Diseases (EuroBloodNet) http://tess.elixir-uk.org/materials/ern-eurobloodnet-thursdays-webinars The aim of these educational activities is to promote the interest on very innovative topics in order to stress among health professionals the cutting-edge advances in the field of Rare Hematological Diseases. One or 2 webinars per month, each of them lasting 45 minutes. Rare diseases Rare Diseases & Research Health Care Professionals health professionals Patient Advocates rare disease patients representatives
Rare and complex urogenital diseases and condition webinars (eUROGEN ERN)

Monthly webinar programme on rare congenital uro-recto-genital anomalies.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Rare and complex urogenital diseases and condition webinars (eUROGEN ERN) http://tess.elixir-uk.org/materials/eurogen-education-and-training-webinars Monthly webinar programme on rare congenital uro-recto-genital anomalies. Rare diseases Rare Diseases & Research healthcare professionals health professionals
Education and Training webinars on genetic tumor risk syndromes (ERN GENTURIS)

Target audience for the webinars are clinicians, genetic counsellors, clinical scientists and other genetics health professionals. The presentation itself lasts approximately 20-30 minutes, and viewers have the opportunity to send questions on the subject area which will be addressed in a...

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Education and Training webinars on genetic tumor risk syndromes (ERN GENTURIS) http://tess.elixir-uk.org/materials/genturis-education-and-training-webinars Target audience for the webinars are clinicians, genetic counsellors, clinical scientists and other genetics health professionals. The presentation itself lasts approximately 20-30 minutes, and viewers have the opportunity to send questions on the subject area which will be addressed in a question & answer session afterwards. Rare diseases Rare Diseases & Research Clinicians Clinical Scientists health professionals geneticists
Webinars on Hereditary metabolic diseases (MetabERN)

To share information and documentation with stakeholders involved in the field of hereditary metabolic disorders.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Webinars on Hereditary metabolic diseases (MetabERN) http://tess.elixir-uk.org/materials/metabern-library-teaching-and-training-programmes To share information and documentation with stakeholders involved in the field of hereditary metabolic disorders. Rare diseases Rare Diseases & Research Health Care Professionals health professionals
Educational webinars on Rare and Complex Connective Tissue and Musculoskeletal Diseases (ERN ReCONNET)

ERN ReCONNET proposes free online training and education.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, Video, e-learning

Educational webinars on Rare and Complex Connective Tissue and Musculoskeletal Diseases (ERN ReCONNET) http://tess.elixir-uk.org/materials/ern-reconnet-educational-webinars ERN ReCONNET proposes free online training and education. Rare diseases Rare Diseases & Research Health Care Professionals health professionals
EBI Metagenomics: analysing and exploring metagenomics data

EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets...

Scientific topics: Metagenomics

Keywords: Metagenomics, MGnify, Sequence Analysis, Microbiology

Resource type: Webinar

EBI Metagenomics: analysing and exploring metagenomics data http://tess.elixir-uk.org/materials/ebi-metagenomics-analysing-and-exploring-metagenomics-data EBI metagenomics is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly datasets. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive. Alex Mitchell Metagenomics Metagenomics, MGnify, Sequence Analysis, Microbiology Life Scientists
EATRIS Transmed Academy - course on translational medicine

e-learning platform which hosts online courses as well as recordings of webinar series.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: e-learning, Webinar

EATRIS Transmed Academy - course on translational medicine http://tess.elixir-uk.org/materials/eatris-transmed-academy e-learning platform which hosts online courses as well as recordings of webinar series. Rare diseases Rare Diseases & Research PhD Students healthcare professionals postdocs
European Patients’ Academy Webinars

12 webinars from EUPATI, for patients and advocates

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

European Patients’ Academy Webinars http://tess.elixir-uk.org/materials/european-patients-academy-webinars 12 webinars from EUPATI, for patients and advocates Rare diseases Rare Diseases & Research rare disease patients representatives Patient Advocates
Alkaptonuria online course

Royal College of General Practitioners webinar on Alkaptonuria – "Black Bone Disease"

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Alkaptonuria online course http://tess.elixir-uk.org/materials/alkaptonuria-resources Royal College of General Practitioners webinar on Alkaptonuria – "Black Bone Disease" Rare diseases Rare Diseases & Research General Physicians healthcare professionals
Integrating to ELIXIR AAI -- instructions for developers

This is a collection of videos, presentations and on-line materials for developers and administrators for integrating a service to ELIXIR AAI, the ELIXIR Compute platform service for user authentication and authorisation.

Scientific topics: Computer science

Keywords: AAI, IAM, Authentication, authorisation

Resource type: Webinar, Presentation, Documentation

Integrating to ELIXIR AAI -- instructions for developers http://tess.elixir-uk.org/materials/integrating-to-elixir-aai-instruction-for-developers This is a collection of videos, presentations and on-line materials for developers and administrators for integrating a service to ELIXIR AAI, the ELIXIR Compute platform service for user authentication and authorisation. Computer science AAI, IAM, Authentication, authorisation software developers, bioinformaticians
Integrated DEsign and AnaLysis of clinical trials in small population group (IDeAl) resources

Webinar Series on Integrated DEsign and AnaLysis of small population group trials

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: e-learning, Webinar

Integrated DEsign and AnaLysis of clinical trials in small population group (IDeAl) resources http://tess.elixir-uk.org/materials/integrated-design-and-analysis-of-clinical-trials-in-small-population-group-ideal-resources Webinar Series on Integrated DEsign and AnaLysis of small population group trials Rare diseases Rare Diseases & Research
Webinars on rare neurological diseases (ERN-RND)

Rare neurological diseases webinars

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Webinars on rare neurological diseases (ERN-RND) http://tess.elixir-uk.org/materials/ern-rnd-webinars-ec014ea5-fa57-4211-9160-1da47d7ce06f Rare neurological diseases webinars Rare diseases Rare Diseases & Research Neurological Paediatricians healthcare professionals Fellows and Residents health professionals
Webinars on rare neuromuscular diseases (EURO-NMD)

Rare neuromuscular diseases webinars

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Webinars on rare neuromuscular diseases (EURO-NMD) http://tess.elixir-uk.org/materials/ern-rnd-webinars Rare neuromuscular diseases webinars Rare diseases Rare Diseases & Research healthcare professionals Neurologists health professionals
RD-Connect Webinars

Three informative webinars for those researchers involved in ERNs

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

RD-Connect Webinars http://tess.elixir-uk.org/materials/euro-nmd-and-rd-connect-webinars Three informative webinars for those researchers involved in ERNs Rare diseases Rare Diseases & Research
Transplantchild Webinars (ERN TransplantChild)

E-learning webinars on various pediatric transplantation items

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, e-learning

Transplantchild Webinars (ERN TransplantChild) http://tess.elixir-uk.org/materials/transplantchild-webinars-ern-transplantchild E-learning webinars on various pediatric transplantation items Rare diseases Rare Diseases & Research
Findacure's e-learning resources on rare diseases

Findacure’s e-learning portal is a central hub of information and training for rare disease advocates and patient groups. It contains educational materials, including written guides, animated videos, presentations and webinars, to help the establishment and growth of rare disease patient groups.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research

Resource type: Webinar, Video, Presentation, Training materials, e-learning

Findacure's e-learning resources on rare diseases http://tess.elixir-uk.org/materials/findacure-s-e-learning-video-library Findacure’s e-learning portal is a central hub of information and training for rare disease advocates and patient groups. It contains educational materials, including written guides, animated videos, presentations and webinars, to help the establishment and growth of rare disease patient groups. Rare diseases Rare Diseases & Research Patient Advocates rare disease patients representatives
Integrated DEsign and AnaLysis of small population group trials (IDeAl)

This series of webinars inform stakeholders about the new IDEAL methodology; the main achievements of each WP of the project and the main outcomes of the whole project.

Scientific topics: Rare diseases

Keywords: Rare Diseases & Research, Training material

Resource type: Webinar, e-learning

Integrated DEsign and AnaLysis of small population group trials (IDeAl) http://tess.elixir-uk.org/materials/integrated-design-and-analysis-of-small-population-group-trials-ideal This series of webinars inform stakeholders about the new IDEAL methodology; the main achievements of each WP of the project and the main outcomes of the whole project. Rare diseases Rare Diseases & Research, Training material
WheatIS DataDiscovery webinar

The [WheatIS project](http://www.wheatis.org/) aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is...

Scientific topics: Data management

Keywords: wheat, information system, data discovery

Resource type: Webinar, Slides, Video

WheatIS DataDiscovery webinar http://tess.elixir-uk.org/materials/wheatis-datadiscovery-webinar The [WheatIS project](http://www.wheatis.org/) aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is endorsed by the [Wheat Initiative](https://www.wheatinitiative.org/). The [WheatIS DataDiscovery tool](https://urgi.versailles.inrae.fr/wheatis/) allows to search data in all the wheat resources around the world. This Webinar described how to use the tool, what data are available, how to join, etc. The replay is available on [Youtube](https://youtu.be/FoVXBhO8arY). Taner Sen Data management wheat, information system, data discovery Researchers Scientists
Data Stewardship Wizard Workshop (Feb 2020)

[Data Stewardship Wizard](ds-wizard.org) brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...

Scientific topics: Data management, Data governance

Keywords: Data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar, Slides

Data Stewardship Wizard Workshop (Feb 2020) http://tess.elixir-uk.org/materials/data-stewardship-wizard-workshop-feb-2020 [Data Stewardship Wizard](ds-wizard.org) brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into per-project questionnaires to be filled by researchers. This workshop explains the core functionality of the Data Stewardship Wizard. Video recording from the workshop is available **[here](https://www.youtube.com/watch?v=aGpr6JFMuiE)**. Data management Data governance Data management plan, data stewardship, FAIR, data management, software tools Researchers data stewards
ELIXIR Webinar: Requirements in data protection law and the upcoming General Data Protection Regulation (GDPR) implementation

Regina Becker (ELIXIR Luxembourg) will give an introduction into the upcoming General Data Protection Legislation (GDPR) that will come into force on 25 May 2018. The new regulation has considerable consequences for managing and storing personal data, imposing more responsibility on the data...

Keywords: GDPR

Resource type: Webinar

ELIXIR Webinar: Requirements in data protection law and the upcoming General Data Protection Regulation (GDPR) implementation http://tess.elixir-uk.org/materials/elixir-webinar-requirements-in-data-protection-law-and-the-upcoming-general-data-protection-regulation-gdpr-implementation Regina Becker (ELIXIR Luxembourg) will give an introduction into the upcoming General Data Protection Legislation (GDPR) that will come into force on 25 May 2018. The new regulation has considerable consequences for managing and storing personal data, imposing more responsibility on the data controllers and data processors. During the webinar, relevant parts of the legislation for research and data sharing will be highlighted. Practical consequences for research institutions and in particular ELIXIR Nodes will be explained, and measures outlined that should be implemented for compliance. In addition, challenges and open questions will be addressed and suggestions made on how to jointly tackle these challenges in ELIXIR. This webinar is of interest for data stewards, Technical Coordinators, and everyone interested in the requirements for processing data for research under the GDPR. GDPR