13 materials found
Resource type:
PDF
Elaboración de un Plan de Gestión de Datos (DMP): teoria y práctica
PDF with slides of the course in Spanish:
- Data management definitions
- DMP Objectives
- DMP Content and structure
- Competencies needed
- Practical session: DMP content analysis and evaluation
Scientific topics: Data management, FAIR data
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, DMP evaluation, evaluation, on-line, e-learning, Spanish
Resource type: PDF, e-learning, slideck/ presentation
Elaboración de un Plan de Gestión de Datos (DMP): teoria y práctica
https://b2drop.bsc.es/index.php/s/dGwxrkkArQEzXNF
http://tess.elixir-uk.org/materials/elaboracion-de-un-plan-de-gestion-de-datos-dmp-teoria-y-practica-1cb1388d-cb82-458f-8f72-62bb55e66180
PDF with slides of the course in Spanish:
- Data management definitions
- DMP Objectives
- DMP Content and structure
- Competencies needed
- Practical session: DMP content analysis and evaluation
Nadia Tonello
Data management
FAIR data
ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, DMP evaluation, evaluation, on-line, e-learning, Spanish
project manager
Researchers
Research Data Management Introduction for researchers
Short summary of the previous session
1.Scope of the DM
2.DMP Content and structure
Practical activities
3.Planning the DM of a simple project
4.DMP evaluation
Scientific topics: Data management, FAIR data
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, DMP evaluation, evaluation, on-line, e-learning
Resource type: PDF, e-learning, slideck/ presentation
Research Data Management Introduction for researchers
https://b2drop.bsc.es/index.php/s/QNMKXn7M3TQzwCt
http://tess.elixir-uk.org/materials/research-data-management-introduction-for-researchers
Short summary of the previous session
1.Scope of the DM
2.DMP Content and structure
Practical activities
3.Planning the DM of a simple project
4.DMP evaluation
Nadia Tonello
Data management
FAIR data
ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, DMP evaluation, evaluation, on-line, e-learning
Researchers
PhD students
Data Management Plans and Policies
PDF with slides of the course:
- Data management definitions
- RDM and DM policy
- DMPs: content and competencies
- DMPs for European and National funded projects
Scientific topics: Data management, FAIR data
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, on-line, e-learning
Resource type: PDF, e-learning, slideck/ presentation
Data Management Plans and Policies
https://b2drop.bsc.es/index.php/s/KpcJ2fJYqgf5HsH
http://tess.elixir-uk.org/materials/data-management-plans-and-policies
PDF with slides of the course:
- Data management definitions
- RDM and DM policy
- DMPs: content and competencies
- DMPs for European and National funded projects
Nadia Tonello
Data management
FAIR data
ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, on-line, e-learning
project manager
Researchers
policy officer
Elaboración de un Plan de Gestión de Datos (DMP): teoria y práctica
PDF with slides of the course in Spanish
- Data management definitions
- DMP Objectives
- DMP Content and structure
- Competencies needed
- Practical session: DMP content analysis and evaluation
Scientific topics: FAIR data, Data management
Keywords: ELIXIR-CONVERGE, DMP, DMP tools, DMP templates, DMP evaluation, Data managment plan, research data management, FAIR principles, tools, template, competency, evaluation, online, e-learning, Spanish
Resource type: PDF, e-learning, slideck/ presentation
Elaboración de un Plan de Gestión de Datos (DMP): teoria y práctica
https://b2drop.bsc.es/index.php/s/yA57gs5gNcfMdoK
http://tess.elixir-uk.org/materials/elaboracion-de-un-plan-de-gestion-de-datos-dmp-teoria-y-practica
PDF with slides of the course in Spanish
- Data management definitions
- DMP Objectives
- DMP Content and structure
- Competencies needed
- Practical session: DMP content analysis and evaluation
Nadia Tonello
FAIR data
Data management
ELIXIR-CONVERGE, DMP, DMP tools, DMP templates, DMP evaluation, Data managment plan, research data management, FAIR principles, tools, template, competency, evaluation, online, e-learning, Spanish
operational manager
IT support
data manager
project manager
policy officer
A FAIRy tale
A FAKE STORY IN A TRUSTWORTHY GUIDE
TO THE FAIR PRINCIPLES FOR RESEARCH DATA
Scientific topics: Data management
Keywords: FAIR
Resource type: PDF
A FAIRy tale
https://vidensportal.deic.dk/sites/default/files/uploads/A%20FAIRy%20tale%20book%20digital_ny.pdf
http://tess.elixir-uk.org/materials/a-fairy-tale
A FAKE STORY IN A TRUSTWORTHY GUIDE
TO THE FAIR PRINCIPLES FOR RESEARCH DATA
Data management
FAIR
Life Science Researchers
An introduction to the role of experimental data in Intellectual Property
data ownership
the role of experimental data in acquiring a patent
the role of data in establishing a prior use right
trade secrets
Keywords: patents
Resource type: PDF
An introduction to the role of experimental data in Intellectual Property
https://doi.org/10.5281/zenodo.3238325
http://tess.elixir-uk.org/materials/an-introduction-to-the-role-of-experimental-data-in-intellectual-property
data ownership
the role of experimental data in acquiring a patent
the role of data in establishing a prior use right
trade secrets
Ben Brigoy
patents
Helis Academy - Data Management Plans, why and how?
Research Data Management
The organisation of data throughout the research project
everyday management of research data (storage, file naming, preservation)
how will data be preserved and shared after the project is completed?
Scientific topics: Data management
Keywords: Data managment plan, Data Life Cycle
Resource type: Slides, PDF
Helis Academy - Data Management Plans, why and how?
https://doi.org/10.5281/zenodo.3167795
http://tess.elixir-uk.org/materials/data-management-plans-why-and-how
Research Data Management
The organisation of data throughout the research project
everyday management of research data (storage, file naming, preservation)
how will data be preserved and shared after the project is completed?
Esther Plomp
Santosh Ilamparuthi
Data management
Data managment plan, Data Life Cycle
Life Science Researchers
IUPHAR/BPS Guide to Pharmacology online tutorial
Online tutorial for the IUPHAR/BPS Guide to Pharmacology database
Scientific topics: Drug discovery, Pharmacology
Resource type: PDF
IUPHAR/BPS Guide to Pharmacology online tutorial
https://www.guidetopharmacology.org/GuidetoPHARMACOLOGY_Tutorial.pdf
http://tess.elixir-uk.org/materials/iuphar-bps-guide-to-pharmacology-online-tutorial
Online tutorial for the IUPHAR/BPS Guide to Pharmacology database
Drug discovery
Pharmacology
Introductory image processing on biological images using python.
A jupyter notebook python practical designed to give students a introduction to opening and processing image files derived from biological samples.
Resource type: Jupyter notebook, PDF
Introductory image processing on biological images using python.
https://github.com/dwaithe/model-training/
http://tess.elixir-uk.org/materials/introductory-image-processing-on-biological-images-using-python
A jupyter notebook python practical designed to give students a introduction to opening and processing image files derived from biological samples.
Dominic Waithe
Anatole Chessel
Volker Baecker
Bioimage Analysts
Image Analysts
Computer Vision scientists
bioinformaticians
computational scientists
Biophysicists
Biologists
Microscopists
Python for Biologists
PhD students
Accessing Expert‐Curated Pharmacological Data in the IUPHAR/BPS Guide to PHARMACOLOGY
The IUPHAR/BPS Guide to PHARMACOLOGY is an expert‐curated, open‐access database of information on drug targets and the substances that act on them. This unit describes the procedures for searching and downloading ligand‐target binding data and for finding detailed annotations and the most...
Scientific topics: Immunology, Pharmacology
Resource type: PDF
Accessing Expert‐Curated Pharmacological Data in the IUPHAR/BPS Guide to PHARMACOLOGY
https://currentprotocols.onlinelibrary.wiley.com/doi/10.1002/cpbi.46
http://tess.elixir-uk.org/materials/accessing-expert-curated-pharmacological-data-in-the-iuphar-bps-guide-to-pharmacology
The IUPHAR/BPS Guide to PHARMACOLOGY is an expert‐curated, open‐access database of information on drug targets and the substances that act on them. This unit describes the procedures for searching and downloading ligand‐target binding data and for finding detailed annotations and the most relevant literature. The database includes concise overviews of the properties of 1,700 data‐supported human drug targets and related proteins, divided into families, and 9,000 small molecule and peptide experimental ligands and approved drugs that bind to those targets. More detailed descriptions of pharmacology, function, and pathophysiology are provided for a subset of important targets. The information is reviewed regularly by expert subcommittees of the IUPHAR Committee on Receptor Nomenclature and Drug Classification. A new immunopharmacology portal has recently been added, drawing together data on immunological targets, ligands, cell types, processes and diseases. The data are available for download and can be accessed computationally via Web services. © 2018 by John Wiley & Sons, Inc.
Joanna L. Sharman
Simon D. Harding
Christopher Southan
Elena Faccenda
Adam J. Pawson
Jamie A. Davies
Immunology
Pharmacology
Introduction to Machine Learning Algorithms
This course offers basics of analysing datasets with machine learning algorithms and data mining techniques in order to understand foundations of learning from large quantities of data.
Scientific topics: Machine learning
Resource type: PDF
Introduction to Machine Learning Algorithms
https://www.ugent.be/hpc/en/training/materials/2017/swsc2017#machinelearning2017
http://tess.elixir-uk.org/materials/introduction-to-machine-learning-algorithms
This course offers basics of analysing datasets with machine learning algorithms and data mining techniques in order to understand foundations of learning from large quantities of data.
Morris Riedel
Machine learning
PhD students
Post Docs
PacBio de novo genome assembly - Hands on exercise
- Produce an assembled genomes from read file(s).
- Produce genomes with :
--– the awaited length,
– few errors (INDELs).
- Use different software packages to produce the genomes.
- Understand the command line structure and some of the
parameters used by the assemblers.
- Polish the genome...
PacBio de novo genome assembly - Hands on exercise
http://genoweb.toulouse.inra.fr/~klopp/Ljubljana2017/Ljubljana_training_hands-on1.pdf
http://tess.elixir-uk.org/materials/pacbio-de-novo-genome-assembly-hands-on-exercise
- Produce an assembled genomes from read file(s).
- Produce genomes with :
--– the awaited length,
– few errors (INDELs).
- Use different software packages to produce the genomes.
- Understand the command line structure and some of the
parameters used by the assemblers.
- Polish the genome to have good quality sequence.
Christophe Klopp
Genome assembly with long reads
- News
- PacBio read production and error patterns
- Nanopore read production and error patterns
- Assembly strategies
- Assembly results
- Conclusions
Genome assembly with long reads
http://genoweb.toulouse.inra.fr/~klopp/Ljubljana2017/Pacbio_assembly_Ljubljana2.pdf
http://tess.elixir-uk.org/materials/genome-assembly-with-long-reads
- News
- PacBio read production and error patterns
- Nanopore read production and error patterns
- Assembly strategies
- Assembly results
- Conclusions
Christophe Klopp