Using Europe PMC for effective literature research
This webinar will explain how to find and access relevant scientific literature and show how you can follow the latest developments in your scientific field. It will cover searches by topic and author, searches for associated research data, as well as advanced options for building complex...
Keywords: Literature search, peer reviewed articles, Europe PMC, Preprints, Data links, Annotations, Europe PMC, ORCID
Resource type: Life Science Literature Database, Life Sciences Literature Database
Using Europe PMC for effective literature research
https://www.ebi.ac.uk/training-beta/events/using-europe-pmc-effective-literature-research/
http://tess.elixir-uk.org/materials/using-europe-pmc-for-effective-literature-research
This webinar will explain how to find and access relevant scientific literature and show how you can follow the latest developments in your scientific field. It will cover searches by topic and author, searches for associated research data, as well as advanced options for building complex queries.
Europe PMC (https://europepmc.org/) is an open biomedical literature database including PubMed indexed articles, preprints, micropublications and more.
This webinar is aimed at scientists who want to optimise their literature searches. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful.
Dayane Araujo
Michael Parkin
Literature search, peer reviewed articles, Europe PMC, Preprints, Data links, Annotations, Europe PMC, ORCID
IBIP19 - Integrative Biological Interpretation using Proteomics (2019)
Training Material aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments.
Keywords: Proteomics
Resource type: Documentation, Exercise, Handout, Scripts
IBIP19 - Integrative Biological Interpretation using Proteomics (2019)
https://gtpb.github.io/IBIP19/
http://tess.elixir-uk.org/materials/ibip19-integrative-biological-interpretation-using-proteomics-2019
Training Material aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments.
The Gulbenkian Training Programme in Bioinformatics
David Bouyssié
Veit Schwämmle
Marc Vaudel
Proteomics
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
CPANG19 - Computational PANGenomics (2019)
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
Keywords: Genomics
Resource type: Documentation, Exercise, Handout, Scripts
CPANG19 - Computational PANGenomics (2019)
https://gtpb.github.io/CPANG19/
http://tess.elixir-uk.org/materials/cpang19-computational-pangenomics-2019
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
The Gulbenkian Training Programme in Bioinformatics
Erik Garrison
Mikko Rautiainen
Genomics
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019)
Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.
Keywords: RNA-Seq, Genomics, RNA
Resource type: Documentation, Exercise, Handout, Scripts
ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019)
https://gtpb.github.io/ADER19F/
http://tess.elixir-uk.org/materials/ader19f-analysis-of-differential-expression-with-rnaseq-first-course-in-2019
Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.
The Gulbenkian Training Programme in Bioinformatics
Daniel Sobral
Daniel Faria
Daniel Neves
RNA-Seq, Genomics, RNA
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
PGDH19 - Population Genetics Demographic History: model-based approaches (2019)
Training material for a hands-on course with a practical approach in the analysis of genetic and genomic data.
Keywords: Population Genomics, Phylogenetics
Resource type: Documentation, Exercise, Handout, Scripts
PGDH19 - Population Genetics Demographic History: model-based approaches (2019)
https://gtpb.github.io/PGDH19/
http://tess.elixir-uk.org/materials/pgdh19-population-genetics-demographic-history-model-based-approaches-2019
Training material for a hands-on course with a practical approach in the analysis of genetic and genomic data.
The Gulbenkian Training Programme in Bioinformatics
Mark Beaumont
Lounès Chikhi
Willy Rodriguez
Vitor Sousa
Armando Arredondo
Population Genomics, Phylogenetics
Academia/ Research Institution
Industry
Non-Profit Organisation
PDA19 - Proteomics Data Analysis (2019)
Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis.
Keywords: Proteomics, Biological databases, Mass spectrometry data
Resource type: Documentation, Exercise, Handout, Scripts
PDA19 - Proteomics Data Analysis (2019)
https://gtpb.github.io/PDA19/
http://tess.elixir-uk.org/materials/pda19-proteomics-data-analysis-2019
Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis.
The Gulbenkian Training Programme in Bioinformatics
Lennart Martens
Harald Barsnes
Lieven Clement
Proteomics, Biological databases, Mass spectrometry data
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ELB19F - Entry level Bioinformatics (First course in 2019)
Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis.
Keywords: Bioinformatics, Sequencing
Resource type: Documentation, Exercise, Handout, Scripts
ELB19F - Entry level Bioinformatics (First course in 2019)
https://gtpb.github.io/ELB19F/
http://tess.elixir-uk.org/materials/elb19f-entry-level-bioinformatics-first-course-in-2019
Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis.
The Gulbenkian Training Programme in Bioinformatics
David Philip Judge
Daniel Sobral
Pedro Fernandes
Bioinformatics, Sequencing
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ELBS18 - Entry level Bioinformatics (Second course in 2018)
Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis
Keywords: Bioinformatics, Sequencing
Resource type: Documentation, Exercise, Handout, Scripts
ELBS18 - Entry level Bioinformatics (Second course in 2018)
https://gtpb.github.io/ELB18S/
http://tess.elixir-uk.org/materials/elbs18-entry-level-bioinformatics-second-course-in-2018
Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis
The Gulbenkian Training Programme in Bioinformatics
David Philip Judge
Daniel Sobral
Pedro Fernandes
Bioinformatics, Sequencing
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ADER18S - Analysis of Differential Expression with RNAseq (Second course in 2018)
Training material for introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.
Keywords: RNA-Seq, Genomics, RNA
Resource type: Documentation, Exercise, Handout, Scripts
ADER18S - Analysis of Differential Expression with RNAseq (Second course in 2018)
https://gtpb.github.io/ADER18S/
http://tess.elixir-uk.org/materials/ader18s-analysis-of-differential-expression-with-rnaseq-second-course-in-2018
Training material for introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.
The Gulbenkian Training Programme in Bioinformatics
Daniel Sobral
Daniel Faria
Daniel Neves
RNA-Seq, Genomics, RNA
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
CPANG18 - Computational PANGenomics (2018)
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
Keywords: Genomics
Resource type: Documentation, Exercise, Handout, Scripts
CPANG18 - Computational PANGenomics (2018)
https://gtpb.github.io/CPANG18/
http://tess.elixir-uk.org/materials/cpang18-computational-pangenomics-2018
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
The Gulbenkian Training Programme in Bioinformatics
Erik Garrison
Mikko Rautiainen
Jordan Eizenga
Genomics
Academia/ Research Institution
Industry
Non-Profit Organisation
PDA18 - Proteomics Data Analysis (2018)
Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis.
Keywords: Proteomics, Biological databases, Mass spectrometry data
Resource type: Documentation, Exercise, Handout, Scripts
PDA18 - Proteomics Data Analysis (2018)
https://gtpb.github.io/PDA18/
http://tess.elixir-uk.org/materials/pda18-proteomics-data-analysis-2018
Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis.
The Gulbenkian Training Programme in Bioinformatics
Lennart Martens
Harald Barsnes
Lieven Clement
Proteomics, Biological databases, Mass spectrometry data
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ADER18F - Analysis of Differential Expression with RNAseq (First course in 2018)
Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.
Keywords: RNA-Seq, Genomics, RNA
Resource type: Documentation, Exercise, Handout, Scripts
ADER18F - Analysis of Differential Expression with RNAseq (First course in 2018)
https://gtpb.github.io/ADER18F/
http://tess.elixir-uk.org/materials/ader18f-analysis-of-differential-expression-with-rnaseq-first-course-in-2018
Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.
The Gulbenkian Training Programme in Bioinformatics
Daniel Sobral
Daniel Faria
Daniel Neves
RNA-Seq, Genomics, RNA
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ELB18F - Entry level Bioinformatics (First course in 2018)
Training material for entry level course in bioinformatics with a soft introduction to NGS data analysis.
Keywords: Bioinformatics, Sequencing
Resource type: Documentation, Exercise, Handout, Scripts
ELB18F - Entry level Bioinformatics (First course in 2018)
https://gtpb.github.io/ELB18F/
http://tess.elixir-uk.org/materials/elb18f-entry-level-bioinformatics-first-course-in-2018
Training material for entry level course in bioinformatics with a soft introduction to NGS data analysis.
The Gulbenkian Training Programme in Bioinformatics
David Philip Judge
Daniel Sobral
Pedro Fernandes
Bioinformatics, Sequencing
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
PPB18 - Programming in Python for Biologists (2018)
Training Material that covers the basic concepts of Python, such as calculation, organization of data, reading and writing files, program logic and writing larger programs. All the examples and exercises focus on solving biological problems.
Operations: Data handling, Data retrieval
Keywords: Bioinformatics, Biology, Biological databases
Resource type: Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
https://gtpb.github.io/PPB18/
http://tess.elixir-uk.org/materials/ppb18-programming-in-python-for-biologists-2018
Training Material that covers the basic concepts of Python, such as calculation, organization of data, reading and writing files, program logic and writing larger programs. All the examples and exercises focus on solving biological problems.
The Gulbenkian Training Programme in Bioinformatics
Allegra Via
Vincenza Colonna
David Philip Judge
Bioinformatics, Biology, Biological databases
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)
Training Material focused in 3C-Data Analysis and 3D Chromatin Folding
Keywords: Hi-C
Resource type: Documentation, Exercise, Handout, Scripts
3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)
https://gtpb.github.io/3DAROC18/
http://tess.elixir-uk.org/materials/3daroc18-3c-based-data-analysis-and-3d-reconstruction-of-chromatin-folding-2018
Training Material focused in 3C-Data Analysis and 3D Chromatin Folding
The Gulbenkian Training Programme in Bioinformatics
Marc A. Martí-Renom
François Serra
David Castillo
Hi-C
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
ABSTAT18 - Advanced Biostatistics for Bioinformatics Tool Users using R (2018)
Training Material centred in Biostatistical techniques often employed in analytical tools for high throughput data and multivariate data.
Keywords: Statistics and probability
Resource type: Documentation, Exercise, Handout, Scripts
ABSTAT18 - Advanced Biostatistics for Bioinformatics Tool Users using R (2018)
https://gtpb.github.io/ABSTAT18/
http://tess.elixir-uk.org/materials/abstat18-advanced-biostatistics-for-bioinformatics-tool-users-using-r-2018
Training Material centred in Biostatistical techniques often employed in analytical tools for high throughput data and multivariate data.
The Gulbenkian Training Programme in Bioinformatics
Lisete Sousa
Carina Silva
Statistics and probability
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
PGDH18 - Population Genetics and Demographic History: model-based approaches (2018)
Training material for hands-on course with a practical approach in the analysis of genetic and genomic data.
Keywords: Population Genomics, Phylogenetics
Resource type: Documentation, Exercise, Handout, Scripts
PGDH18 - Population Genetics and Demographic History: model-based approaches (2018)
https://gtpb.github.io/PGDH18/
http://tess.elixir-uk.org/materials/pgdh18-population-genetics-and-demographic-history-model-based-approaches-2018
Training material for hands-on course with a practical approach in the analysis of genetic and genomic data.
The Gulbenkian Training Programme in Bioinformatics
Mark Beaumont
Lounès Chikhi
Willy Rodríguez
Armando Arredondo Soto
Vitor Sousa
Population Genomics, Phylogenetics
Academia/ Research Institution
Industry
Non-Profit Organisation
PSLS20 - Practical Statistics for the Life Sciences (2020)
Training material that covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences.
Keywords: Statistics, General Linear Models
Resource type: Documentation, Exercise, Handout, Scripts
PSLS20 - Practical Statistics for the Life Sciences (2020)
https://gtpb.github.io/PSLS20
http://tess.elixir-uk.org/materials/psls20-practical-statistics-for-the-life-sciences-2020
Training material that covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences.
The Gulbenkian Training Programme in Bioinformatics
Lieven Clement
Jeroen Gilis
Statistics, General Linear Models
Academia/ Research Institution
Industry
Healthcare
Non-Profit Organisation
MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools
This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa.
Scientific topics: Computational biology, Mathematics
Keywords: ComputationalBiology, Neuroscience, complex systems, Mathematics
Resource type: Notes, Scripts
MATHEMATICS BOOT CAMP: Introduction to Complex Systems Tools
https://github.com/vjirsa/bootcamp
http://tess.elixir-uk.org/materials/mathematics-boot-camp-introduction-to-complex-systems-tools
This repository contains didactic material used in an introductory course of mathematics at the Center for Complex Systems and Brain Sciences in Florida Atlantic University by Viktor K. Jirsa.
Viktor Jistra
Felix Almonte
Collins Assisi
Frederick Carver
Gautam Vallabha
Jaime Morris
Ajay Pillai
Armin Fuchs
Computational biology
Mathematics
ComputationalBiology, Neuroscience, complex systems, Mathematics
Undergraduate students