Resource type: Jupyter notebook or Poster
BioExcel Building Blocks (BioBB) is a software library for interoperable biomolecular simulation workflows, built within the BioExcel CoE project, and developed following best practices on software development aligned with ELIXIR.
Keywords: molecular dynamics, Docking, Modeling, life sciences
Resource type: Jupyter notebook
DE-Sim is an open-source, Python-based object-oriented discrete-event simulation (DES) tool that makes it easy to use large, heterogeneous datasets and high-level data science tools such as NumPy, Scipy,...
Scientific topics: Computational biology, Mathematics, Computer science, Simulation experiment
Operations: Visualisation, Modelling and simulation
Keywords: data-driven modeling, Computational modelling, discrete-event simulation, DES, object-oriented programming, Python, data visualization, Data Science
Resource type: examples, Tutorial, Jupyter notebook, API reference
This is an image processing practical for students with an interest in analysing biologically derived images. It is written in the language python and utilises jupyter notebook for annotation and visualisation of the code. The practical is beginner level, although some knowledge of python is...
Resource type: Jupyter notebook, PDF
Dr James Proctor of the University of Dundee discusses the Jalview tool in the Vis Tools & Bio Challenges session of the 1st BiVi Annual Meeting
Created at: 1st BiVi Annual Meeting.
Scientific topics: Phylogenetics
Keywords: Genome, Molecular, Phylogenetics
Resource type: Poster, Video
Poster presentation by Dr Maya Topf at 1st BiVi Annual Meeting in 2014
Created at: 1st BiVi Annual Meeting.
Resource type: Poster
Prof. Frederic Fol Leymarie discusses the Foldsynth project at 1st BiVi in 2014. A poster presented at the meeting is also included.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Poster, Video
Colin Combe discusses the visualisation of cross-linking/mass spectrometry data at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Poster, Video
Poster presentation given at 1st BiVi in 2014
Created at: 1st BiVi Annual Meeting.
Resource type: Poster
Poster presentation at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Poster
Poster presentation from 1st BiVi in 2014
Created at: 1st BiVi Annual Meeting.
Keywords: Genome
Resource type: Poster
Dr Roy Ruddle discusses large displays for visualisation and the Leeds Virtual Microscope and Orchestral tools at 1st BiVi in 2014. Posters presented regarding the two tools discussed are also included.
Created at: 1st BiVi Annual Meeting.
Keywords: Genome
Resource type: Poster, Video
Poster presentation at 1st BiVi in 2014 regarding the user evaluation of the Helium visualisaiton tool.
Created at: 1st BiVi Annual Meeting.
Keywords: Genome, Populations, HCI
Resource type: Poster
Stephen Taylor discusses the Zegami visualisation tool at 1st BiVi in 2014. An associated poster is also available.
Created at: 1st BiVi Annual Meeting.
Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome
Resource type: Poster, Video
Poster presented at 3rd BiVi in April 2017.InterMine is an open source data warehouse based in the University of Cambridge. We integrate data from disparate sources and provide a single unified interface, allowing you to access your data via an easy-to-use webapp or API. InterMine has over 30...
Keywords: Cells and Organisms
Resource type: Poster
Poster presentation at 3rd BiVi in April 2017.
Created at: 3rd BiVi Annual Meeting (2017).
Keywords: Molecular
Resource type: Poster
Poster presentation at 3rd BiVi in April 2017.Presenitng a suite of web applications, developed for the PRECISION-Parc initiative, to provide integrative analyses of genomic and transcription data from patient primary samples, cell lines and xenografts, as well as clinical data on patient...
Scientific topics: Pathway or network
Keywords: Genome, Pathway
Resource type: Poster
Poster presentation at 3rd BiVi in April 2017.
Created at: 3rd BiVi Annual Meeting (2017).
Scientific topics: Phylogenetics
Keywords: Phylogenetics
Resource type: Poster