Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- What is mapping-by-sequencing?
- How can it help you identify the causative mutation in phenotypic mutants isolated from genetic screens?
Objectives of the tutorial:
- Use joint...
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
http://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html
http://tess.elixir-uk.org/materials/variant-analysis-mapping-by-sequencing
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- What is mapping-by-sequencing?
- How can it help you identify the causative mutation in phenotypic mutants isolated from genetic screens?
Objectives of the tutorial:
- Use joint variant calling and extraction to facilitate variant comparison across samples
- Perform variant linkage analyses for phenotypically selected recombinant progeny
- Filter, annotate and report lists of variants
wm75
Variant Analysis - Microbial Variant Calling
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How do we detect differences between a set of reads from a microorganism and a reference genome
Objectives of the tutorial:
- Find variants between a reference genome and a set of...
Variant Analysis - Microbial Variant Calling
http://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/microbial-variants/tutorial.html
http://tess.elixir-uk.org/materials/variant-analysis-microbial-variant-calling
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How do we detect differences between a set of reads from a microorganism and a reference genome
Objectives of the tutorial:
- Find variants between a reference genome and a set of reads
- Visualise the SNP in context of the reads aligned to the genome
- Determine the effect of those variants on genomic features
- Understand if the SNP is potentially affecting the phenotype
annasyme
slugger70
tseemann
Variant Analysis - Calling variants in non-diploid systems
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How does frequency of mitochondrial polymorphisms change from mother to child?
Objectives of the tutorial:
- Using Galaxy's main site we will see how to call variants in bacteria,...
Variant Analysis - Calling variants in non-diploid systems
http://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/non-dip/tutorial.html
http://tess.elixir-uk.org/materials/variant-analysis-calling-variants-in-non-diploid-systems
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How does frequency of mitochondrial polymorphisms change from mother to child?
Objectives of the tutorial:
- Using Galaxy's main site we will see how to call variants in bacteria, viruses, and organelles.
nekrut
Variant Analysis - Exome sequencing data analysis
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How to identify the genetic variation with the use of exome sequencing?
- What is the pipeline of the process of finding genetic variation which caused the disease?
Objectives of the...
Variant Analysis - Exome sequencing data analysis
http://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/exome-seq/tutorial.html
http://tess.elixir-uk.org/materials/variant-analysis-exome-sequencing-data-analysis
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How to identify the genetic variation with the use of exome sequencing?
- What is the pipeline of the process of finding genetic variation which caused the disease?
Objectives of the tutorial:
- Identification of the genetic variation using the exome sequencing
- Using FreeBayes calls for variants generating
- Variant analysis and GEMINI queries
bebatut
torhou
erxleben
bgruening
