ELN basics training materials
Electronic laboratory notebooks - basic intro in their use and functionality
Resource type: Presentation, hackathon
ELN basics training materials
https://zenodo.org/record/4518805#.YFCyPucxlhE
http://tess.elixir-uk.org/materials/eln-basics-training-materials
Electronic laboratory notebooks - basic intro in their use and functionality
Anastasios Papadiamantis, UoB
Martin Himly, PLUS
experimental nanoscientists
Epigenetics - Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.
Questions of the tutorial:
- Why is a Hi-C analysis useful?
- What is...
Epigenetics - Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
http://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/hicexplorer/tutorial.html
http://tess.elixir-uk.org/materials/epigenetics-hi-c-analysis-of-drosophila-melanogaster-cells-using-hicexplorer
DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.
Questions of the tutorial:
- Why is a Hi-C analysis useful?
- What is 'chromosome conformation capture'?
- What are main steps in order to generate and plot a Hi-C contact matrix?
joachimwolff
fidelram
vivekbhr
polkhe
Epigenetics - DNA Methylation data analysis
DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.
Questions of the tutorial:
- What is methylation and why it cannot be...
Epigenetics - DNA Methylation data analysis
http://galaxyproject.github.io/training-material/topics/epigenetics/tutorials/methylation-seq/tutorial.html
http://tess.elixir-uk.org/materials/epigenetics-dna-methylation-data-analysis
DNA methylation is an epigenetic mechanism used by higher eukaryotes and involved in e.g. gene expression, X-Chromosome inactivating, imprinting, and gene silencing of germline specific gene and repetitive elements.
Questions of the tutorial:
- What is methylation and why it cannot be recognised by a normal NGS procedure?
- Can a different methylation influence the expression of a gene? How?
- Which tools you can use to analyse methylation data?
Objectives of the tutorial:
- Learn how to analyse methylation data
- Get a first intuition what are common pitfalls.
joachimwolff
dpryan79
