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Related resources: Workshop FAIR & Data stewar...  or Sequence analysis dataset 


Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle

This material is part of an follow up FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

FAIR and data stewardship - November 3th, 2021
Organiser: Dutch Techcentre For Life Sciences, DTL
Setup: Virtual meeting...

Scientific topics: FAIR data, Data management

Operations: Analysis, Data handling

Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

Resource type: Slidedeck

Sequence analysis - RAD-Seq to construct genetic maps

Analyses of sequences

Questions of the tutorial:

  • How to analyze RAD sequencing data for a genetic map study?

Objectives of the tutorial:

  • SNP calling from RAD sequencing data
  • Find and correct haplotypes
  • Create input files for genetic map building software

Resource type: Tutorial

Sequence analysis - RAD-Seq de-novo data analysis

Analyses of sequences

Questions of the tutorial:

  • How to analyze RAD sequencing data without a reference genome for a population genomics study?

Objectives of the tutorial:

  • Analysis of RAD sequencing data without a reference genome
  • SNP calling from RAD sequencing data
  • Calculate...

Resource type: Tutorial

Sequence analysis - RAD-Seq Reference-based data analysis

Analyses of sequences

Questions of the tutorial:

  • How to analyze RAD sequencing data using a reference genome for a population genomics study?

Objectives of the tutorial:

  • Analysis of RAD sequencing data using a reference genome
  • SNP calling from RAD sequencing data
  • Calculate population...

Resource type: Tutorial

Sequence analysis - Mapping

Analyses of sequences

Questions of the tutorial:

  • What two things are crucial for a correct mapping?
  • What is BAM?

Objectives of the tutorial:

  • You will learn what mapping is
  • A genome browser is shown that helps you to understand your data

Resource type: Tutorial

Sequence analysis - Quality Control

Analyses of sequences

Questions of the tutorial:

  • How to control quality of NGS data?
  • What are the quality parameters to check for each dataset?
  • How to improve the quality of a sequence dataset?

Objectives of the tutorial:

  • Manipulate FastQ files
  • Control quality from a FastQ file -...

Resource type: Tutorial