This material is part of an follow up FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

FAIR and data stewardship - November 3th, 2021
Organiser: Dutch Techcentre For Life Sciences, DTL
Setup: Virtual meeting...

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

• How are RNA-Seq results stored?
• Why are visualization techniques needed?
• How to select our desired subjects for differential gene expression analysis?

Objectives of the tutorial:

• Manage RNA-Seq...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

• How can visualization plugins benefit science?

Objectives of the tutorial:

• Implement a first Galaxy...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

• What are Galaxy Webhooks?
• How to create them?

Objectives of the tutorial:

• Discover what Galaxy...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

• How can I make a custom plugin for Charts?

Objectives of the tutorial:

• Learn how to add custom...

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Analyses of sequences

Questions of the tutorial:

• What two things are crucial for a correct mapping?
• What is BAM?

Objectives of the tutorial:

• You will learn what mapping is
• A genome browser is shown that helps you to understand your data

Analyses of sequences

Questions of the tutorial:

• How to control quality of NGS data?
• What are the quality parameters to check for each dataset?
• How to improve the quality of a sequence dataset?

Objectives of the tutorial:

• Manipulate FastQ files
• Control quality from a FastQ file -...