Constraint-based reconstruction and analysis toolbox tutorials
A suite of >50 tutorials to enable beginners, as well as intermediate and advanced users to practice a wide variety of COBRA methods.
Keywords: Biomodelling
Resource type: Tutorial
Constraint-based reconstruction and analysis toolbox tutorials
https://opencobra.github.io/cobratoolbox/stable/tutorials/index.html
http://tess.elixir-uk.org/materials/constraint-based-reconstruction-and-analysis-toolbox-tutorials
A suite of >50 tutorials to enable beginners, as well as intermediate and advanced users to practice a wide variety of COBRA methods.
COBRA Toolbox development team
Biomodelling
Biologists, Genomicists, Computer Scientists
Metagenomics - Analyses of metagenomics data - The global picture
Metagenomics is a discipline that enables the genomic study of uncultured microorganisms
Questions of the tutorial:
- How to analyze metagenomics data?
- What information can be extracted of metagenomics data?
- What is the difference between amplicon and shotgun data?
- What are the difference...
Metagenomics - Analyses of metagenomics data - The global picture
http://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/general-tutorial/tutorial.html
http://tess.elixir-uk.org/materials/metagenomics-analyses-of-metagenomics-data-the-global-picture
Metagenomics is a discipline that enables the genomic study of uncultured microorganisms
Questions of the tutorial:
- How to analyze metagenomics data?
- What information can be extracted of metagenomics data?
- What is the difference between amplicon and shotgun data?
- What are the difference in the analyses of amplicon and shotgun data?
Objectives of the tutorial:
- Choosing the best approach to analyze metagenomics data
- Selection of tools to analyze amplicon data or shotgun data
- Visualisation of a community structure
shiltemann
bebatut
Metagenomics - 16S Microbial Analysis with Mothur
Metagenomics is a discipline that enables the genomic study of uncultured microorganisms
Questions of the tutorial:
- What is the effect of normal variation in the gut microbiome on host health?
Objectives of the tutorial:
- Analyze of 16S rRNA sequencing data using the Mothur toolsuite in...
Metagenomics - 16S Microbial Analysis with Mothur
http://galaxyproject.github.io/training-material/topics/metagenomics/tutorials/mothur-miseq-sop/tutorial.html
http://tess.elixir-uk.org/materials/metagenomics-16s-microbial-analysis-with-mothur
Metagenomics is a discipline that enables the genomic study of uncultured microorganisms
Questions of the tutorial:
- What is the effect of normal variation in the gut microbiome on host health?
Objectives of the tutorial:
- Analyze of 16S rRNA sequencing data using the Mothur toolsuite in Galaxy
shiltemann
bebatut
