Constraint-based reconstruction and analysis toolbox tutorials
A suite of >50 tutorials to enable beginners, as well as intermediate and advanced users to practice a wide variety of COBRA methods.
Keywords: Biomodelling
Resource type: Tutorial
Constraint-based reconstruction and analysis toolbox tutorials
https://opencobra.github.io/cobratoolbox/stable/tutorials/index.html
http://tess.elixir-uk.org/materials/constraint-based-reconstruction-and-analysis-toolbox-tutorials
A suite of >50 tutorials to enable beginners, as well as intermediate and advanced users to practice a wide variety of COBRA methods.
COBRA Toolbox development team
Biomodelling
Biologists, Genomicists, Computer Scientists
Contributing to the Galaxy Training Material - Contributing with GitHub via command-line
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Contributing to the Galaxy Training Material - Contributing with GitHub via command-line
http://galaxyproject.github.io/training-material/topics/contributing/tutorials/github-command-line-contribution/tutorial.html
http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-contributing-with-github-via-command-line
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Questions of the tutorial:
- How can I contribute to an open-source project with GitHub?
- What is the GitHub flow?
Objectives of the tutorial:
- Fork a repository on GitHub
- Clone a remote repository locally
- Create a branch
- Commit changes
- Push changes to a remote repository
- Create a pull request
- Update a pull request
cmonjeau
bebatut
