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10 materials found

Related resources: Assembly dataset  or Associated slides 


Assembly - Making sense of a newly assembled genome

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Resource type: Tutorial

Assembly - Unicycler Assembly

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Resource type: Tutorial

Transcriptomics - Visualization of RNA-Seq results with CummeRbund

Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

  • How are RNA-Seq results stored?
  • Why are visualization techniques needed?
  • How to select our desired subjects for differential gene expression analysis?

Objectives of the tutorial:

  • Manage RNA-Seq...

Resource type: Tutorial

Development in Galaxy - Visualizations: generic plugins

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

  • How can visualization plugins benefit science?

Objectives of the tutorial:

  • Implement a first Galaxy...

Resource type: Tutorial

Development in Galaxy - Galaxy Webhooks

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

  • What are Galaxy Webhooks?
  • How to create them?

Objectives of the tutorial:

  • Discover what Galaxy...

Resource type: Tutorial

Development in Galaxy - Visualizations: charts plugins

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

  • How can I make a custom plugin for Charts?

Objectives of the tutorial:

  • Learn how to add custom...

Resource type: Tutorial

Assembly - De Bruijn Graph Assembly

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Resource type: Tutorial

Assembly - Introduction to Genome Assembly

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Resource type: Tutorial

Sequence analysis - Mapping

Analyses of sequences

Questions of the tutorial:

  • What two things are crucial for a correct mapping?
  • What is BAM?

Objectives of the tutorial:

  • You will learn what mapping is
  • A genome browser is shown that helps you to understand your data

Resource type: Tutorial

Sequence analysis - Quality Control

Analyses of sequences

Questions of the tutorial:

  • How to control quality of NGS data?
  • What are the quality parameters to check for each dataset?
  • How to improve the quality of a sequence dataset?

Objectives of the tutorial:

  • Manipulate FastQ files
  • Control quality from a FastQ file -...

Resource type: Tutorial