Register training material
1609 materials found

WEBINAR: Here's one we prepared earlier: (re)creating bioinformatics methods and workflows with Galaxy Australia

This record includes training materials associated with the Australian BioCommons webinar ‘Here’s one we prepared earlier: (re)creating bioinformatics methods and workflows with Galaxy Australia’. This webinar took place on 26 October 2022.

Event description 

Have you discovered a brilliant...

Keywords: Bioinformatics, Workflows, FAIR, Galaxy Australia

AlphaFold2 - ML revolution in structural biology

Public lecture for students and staff from NCBR Masaryk University Brno about AlphaFold by Karel Berka (Palacky University Olomouc).

Keywords: protein-3D-structure, Structural genomics, Machine learning, Alphafold, AlphaFold Database (13181)

Jan Pačes - SARS-CoV-2: Lectures from Evolutionary Biology

Jan Pačes, Institute of Molecular Genetics of the CAS, ELIXIR CZ

SARS-CoV-2: lectures from evolutionary biology

What has actually happened in the last two years? Let's find out what virus sequencing and mutation tracking brought us for information about the course of the pandemic from an...

Scientific topics: Genomics

Keywords: covid19, Genomics, evolution

Karel Berka and Marian Novotný - Alphafoldology - Machine Learning revolution in structural biology

Karel Berka (PřF UPOL) and Marian Novotný (PřF UK) presents Alphafoldology - Machine Learning revolution in structural biology

An algorithm Alphafold has been named by Science journal a scientific breakthrough of the year 2021 - the Alphafold algorithm predicted 3D structures of proteins from...

Scientific topics: Structure prediction, Structural biology, Machine learning

Keywords: AlphaFold Database (13181), Alphafold, Structures (structures), protein-3D-structure, Machine learning

Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial

The questions this addresses are:
- With reassortment of gene segments being a common event in avian influenza virus (AIV) evolution, does it make sense to use a reference-based mapping approach for constructing consensus genome sequences for AIV samples?
- Is it possible to reuse existing...

Scientific topics: Genetic variation

Keywords: variant-analysis, virology, public health, work-in-progress

Resource type: hands-on tutorial

Parameter Scanning and Sampling in COPASI

A video tutorial for the simulation software COPASI, showing how to create sequences of simulations that scan values of various parameters, or that sample those parameters at random.

COPASI logo

Scientific topics: Simulation experiment

Operations: Modelling and simulation, Analysis, Visualisation

Keywords: SystemsBiology, ComputationalBiology, Computational modelling, Kinetic modeling, COPASI

Resource type: Video

Metabolic Control Analysis in COPASI

A tutorial on Metabolic Control Analysis and how to apply it to kinetic models with the software COPASI.

COPASI logo

Scientific topics: Simulation experiment, Systems biology

Operations: Modelling and simulation, Analysis, Visualisation

Keywords: SystemsBiology, ComputationalBiology, Computational modelling, Kinetic modeling, COPASI

Resource type: Video

Steady State Analysis in COPASI

A short tutorial on how to carry out steady state simulations with the software COPASI.

COPASI logo

Scientific topics: Systems biology, Computational biology, Simulation experiment

Operations: Modelling and simulation, Visualisation

Resource type: Video

Time Course Simulation in COPASI

A short tutorial on how to carry out time course simulations based on ODEs with the software COPASI.

COPASI logo

Scientific topics: Simulation experiment

Operations: Modelling and simulation, Visualisation

Keywords: SystemsBiology, ComputationalBiology, Computational modelling, Kinetic modeling, COPASI

Resource type: Video

Model Creation using COPASI

A tutorial on how to create kinetic models with COPASI. Covers the basics of creating models, including definition of new rate laws, etc.

COPASI logo

Scientific topics: Simulation experiment

Operations: Modelling and simulation, Visualisation

Keywords: SystemsBiology, ComputationalBiology, Computational modelling, modeling, Biomodelling, Model, Kinetic modeling, COPASI

Resource type: Video

Hands-on for 'Python - Coding Style' tutorial

The questions this addresses are:
- Why should you follow software code style conventions?
- Who is setting code style conventions?
- What code style conventions exist for Python?

The objectives are:
- Understand the benefits of following community coding conventions

Keywords: data-science, jupyter-notebook

Resource type: hands-on tutorial

How to create a concept for the SPHN Dataset

How to create a concept for the SPHN Dataset is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centred around the SPHN Interoperability Framework developed by the SPHN Data...

Scientific topics: Computer science, Data management, FAIR data, Medical informatics

Operations: Design, Standardisation and normalisation

Keywords: Clinical data, Semantic Framework, FAIR, Concepts design, Ontology, Semantic inheritance, SNOMED CT, Conceptualization

Resource type: Video, E-Learning

An introduction to MobiDB

In this course you will learn what type of information is stored in the MobiDB database (URL: https://mobidb.org/) that provides predictions and annotations for intrinsically disordered proteins. You will explore the main features of the database, its entries along with the related documentation....

Keywords: intrinsically disordered proteins, Databases, intrinsic disorder prediction, protein sequence

Resource type: Webinar, Training materials

WEBINAR: Effective, inclusive, and scalable training in the life sciences, clinical education and beyond

This record includes training materials associated with the Australian BioCommons/Melbourne Genomics webinar ‘Effective, inclusive, and scalable training in the life sciences, clinical education and beyond’. This webinar took place on 4 November 2022.

Event description 

Scientists and...

Keywords: Short-format training, Clinical education, Continuing education, Professional development, Training, Lifelong learning, Pedagogy

RDMbites | Characters to use and avoid in filenames

In this RDMbite I will show you which special characters to use and which to avoid in file names.
Even though we show examples of how to name files, this information applies to naming directories and folders also.

Keywords: Data management

Resource type: Video

RDMbites | Machine and human readable file naming

In this RDMbite I will show you how to name your files so that they can be read and interpreted by yourself and others.
This includes filenames that are both machine-readable and human-readable, also using punctuation to be able to order and group sets of files.
Although we use examples of how...

Keywords: Data management

Resource type: Video

RDMbites | REDCap: how to run data quality checks

In this video, I will show you how to create and run data quality checks in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to set missing data codes

In this video, I will show you how to set and disable missing data codes in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to add minimum/maximum and date/time formats

In this video, I will show you how to add parameters to your data collection, such as limits on minimum and maximum values, and specific date formats, on REDCap

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to disable selected multiple choice options

In this video, you will learn how to disable specific multiple choice options in REDCap, without deleting and recreating the whole field.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to build a medication table

In this video, I will show you how to build a table to capture data on medication in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to auto-fill dates and time

In this video, I will show you how to set date and time fields to auto-fill during data collection on REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: Introduction

In this video, you are going to learn what REDCap is, how you can get access to it, what it can be used for, and REDCap training resources.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to create a variable with an unknown number of responses

In this video, I will show/demonstrate how to create a question with an unknown number of responses in REDCap

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: How to disable auto-numbering

In this video, I will show you how to disable auto-numbering, edit a patient ID field, or create a secondary ID field on REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to find information for a project audit

In this video, I will show you how to find the necessary information you may need for a project audit in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to download PDFs of your surveys

In this video,I will show you how to download files of your surveys and questionnaires from REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to export your project files

In this video, I’ll show you how to export your project files from REDCap.

Keywords: REDCap, sensitive data

Resource type: Video

RDMbites | REDCap: how to build a report

In this video, I will show you how to build a report in REDCap.

Keywords: REDCap, sensitive data

Resource type: Video