This record includes training materials associated with the Australian BioCommons webinar ‘Here’s one we prepared earlier: (re)creating bioinformatics methods and workflows with Galaxy Australia’. This webinar took place on 26 October 2022.
Event description
Have you discovered a brilliant...
Keywords: Bioinformatics, Workflows, FAIR, Galaxy Australia
Public lecture for students and staff from NCBR Masaryk University Brno about AlphaFold by Karel Berka (Palacky University Olomouc).
Keywords: protein-3D-structure, Structural genomics, Machine learning, Alphafold, AlphaFold Database (13181)
Jan Pačes, Institute of Molecular Genetics of the CAS, ELIXIR CZ
SARS-CoV-2: lectures from evolutionary biology
What has actually happened in the last two years? Let's find out what virus sequencing and mutation tracking brought us for information about the course of the pandemic from an...
Scientific topics: Genomics
Keywords: covid19, Genomics, evolution
Karel Berka (PřF UPOL) and Marian Novotný (PřF UK) presents Alphafoldology - Machine Learning revolution in structural biology
An algorithm Alphafold has been named by Science journal a scientific breakthrough of the year 2021 - the Alphafold algorithm predicted 3D structures of proteins from...
Scientific topics: Structure prediction, Structural biology, Machine learning
Keywords: AlphaFold Database (13181), Alphafold, Structures (structures), protein-3D-structure, Machine learning
The questions this addresses are:
- With reassortment of gene segments being a common event in avian influenza virus (AIV) evolution, does it make sense to use a reference-based mapping approach for constructing consensus genome sequences for AIV samples?
- Is it possible to reuse existing...
Scientific topics: Genetic variation
Keywords: variant-analysis, virology, public health, work-in-progress
Resource type: hands-on tutorial
No description provided.
A video tutorial for the simulation software COPASI, showing how to create sequences of simulations that scan values of various parameters, or that sample those parameters at random.
Scientific topics: Simulation experiment
Operations: Modelling and simulation, Analysis, Visualisation
Keywords: SystemsBiology, ComputationalBiology, Computational modelling, Kinetic modeling, COPASI
Resource type: Video
A tutorial on Metabolic Control Analysis and how to apply it to kinetic models with the software COPASI.
Scientific topics: Simulation experiment, Systems biology
Operations: Modelling and simulation, Analysis, Visualisation
Keywords: SystemsBiology, ComputationalBiology, Computational modelling, Kinetic modeling, COPASI
Resource type: Video
A short tutorial on how to carry out steady state simulations with the software COPASI.
Scientific topics: Systems biology, Computational biology, Simulation experiment
Operations: Modelling and simulation, Visualisation
Resource type: Video
A short tutorial on how to carry out time course simulations based on ODEs with the software COPASI.
Scientific topics: Simulation experiment
Operations: Modelling and simulation, Visualisation
Keywords: SystemsBiology, ComputationalBiology, Computational modelling, Kinetic modeling, COPASI
Resource type: Video
A tutorial on how to create kinetic models with COPASI. Covers the basics of creating models, including definition of new rate laws, etc.
Scientific topics: Simulation experiment
Operations: Modelling and simulation, Visualisation
Keywords: SystemsBiology, ComputationalBiology, Computational modelling, modeling, Biomodelling, Model, Kinetic modeling, COPASI
Resource type: Video
The questions this addresses are:
- Why should you follow software code style conventions?
- Who is setting code style conventions?
- What code style conventions exist for Python?
The objectives are:
- Understand the benefits of following community coding conventions
Keywords: data-science, jupyter-notebook
Resource type: hands-on tutorial
How to create a concept for the SPHN Dataset is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centred around the SPHN Interoperability Framework developed by the SPHN Data...
Scientific topics: Computer science, Data management, FAIR data, Medical informatics
Operations: Design, Standardisation and normalisation
Keywords: Clinical data, Semantic Framework, FAIR, Concepts design, Ontology, Semantic inheritance, SNOMED CT, Conceptualization
Resource type: Video, E-Learning
In this course you will learn what type of information is stored in the MobiDB database (URL: https://mobidb.org/) that provides predictions and annotations for intrinsically disordered proteins. You will explore the main features of the database, its entries along with the related documentation....
Keywords: intrinsically disordered proteins, Databases, intrinsic disorder prediction, protein sequence
Resource type: Webinar, Training materials
This record includes training materials associated with the Australian BioCommons/Melbourne Genomics webinar ‘Effective, inclusive, and scalable training in the life sciences, clinical education and beyond’. This webinar took place on 4 November 2022.
Event description
Scientists and...
Keywords: Short-format training, Clinical education, Continuing education, Professional development, Training, Lifelong learning, Pedagogy
In this RDMbite I will show you which special characters to use and which to avoid in file names.
Even though we show examples of how to name files, this information applies to naming directories and folders also.
Keywords: Data management
Resource type: Video
In this RDMbite I will show you how to name your files so that they can be read and interpreted by yourself and others.
This includes filenames that are both machine-readable and human-readable, also using punctuation to be able to order and group sets of files.
Although we use examples of how...
Keywords: Data management
Resource type: Video
In this video, I will show you how to create and run data quality checks in REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to set and disable missing data codes in REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to add parameters to your data collection, such as limits on minimum and maximum values, and specific date formats, on REDCap
Keywords: REDCap, sensitive data
Resource type: Video
In this video, you will learn how to disable specific multiple choice options in REDCap, without deleting and recreating the whole field.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to build a table to capture data on medication in REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to set date and time fields to auto-fill during data collection on REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, you are going to learn what REDCap is, how you can get access to it, what it can be used for, and REDCap training resources.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show/demonstrate how to create a question with an unknown number of responses in REDCap
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to disable auto-numbering, edit a patient ID field, or create a secondary ID field on REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to find the necessary information you may need for a project audit in REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video,I will show you how to download files of your surveys and questionnaires from REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I’ll show you how to export your project files from REDCap.
Keywords: REDCap, sensitive data
Resource type: Video
In this video, I will show you how to build a report in REDCap.
Keywords: REDCap, sensitive data
Resource type: Video