Training materials
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slides, Video, quiz
Bulk RNASeq: from counts to differential expression
• beginnerRNA-Seq, Expression analysis, Differential expression, RNA-seq
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Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science, Data management, FAIR data, Medical informatics, Design, Standardisation and normalisation, Clinical data, Semantic Framework, FAIR, Concepts design, Ontology, Semantic inheritance, SNOMED CT, Conceptualization
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Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis, Machine learning, Structure prediction, Structure visualisation, Multiple sequence alignment, AlphaFold Database (13181)
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics, Sample collections, Metabolomics, Metagenomics, hologenomics, metagenomics, MGnify, Workshop
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Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science, Data management, FAIR data, Medical informatics, Data mining, Query and retrieval, Database search, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC, Interoperability
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Slidedeck
Helis Academy course FAIR data stewardship 2021, Day 1, (Reviewing) Data Management Plans
• beginnerData management, FAIR data, Data handling, Data management planning
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Slides
FAIR data - Module 4 (share and publish data)
• beginnerBioinformatics, Biology, Data management, data sharing, Data publishing, legal framework, data warehouse, licensing, data reuse
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Slides
FAIR data - Module 3 (Metadata)
• beginnerBioinformatics, Biology, Data management, Data handling, metadata, data annotation, life science standards, data sharing
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Series of videos
CINECA discovery service catalog
•• intermediateCohort data, Standards, federated data analysis, Beacon queries
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Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design, data access, federated data analysis