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Keywords: Statistical-model  or Data analysis 

Helis Academy course FAIR data stewardship 2021, Day 3, Electronic Lab Notebooks (ELN)

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Electronic Lab Notebooks (ELN), Data processing, Data analysis

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 3, Electronic Lab Notebooks (ELN) http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-3-electronic-lab-notebooks-eln This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021 Data management FAIR data Electronic Lab Notebooks (ELN), Data processing, Data analysis PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 4, Data carpentry

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data carpentry, Data analysis

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 4, Data carpentry http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-4-data-carpentry This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021 Data management FAIR data Data carpentry, Data analysis PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 4, Software carpentry

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data analysis, Software Carpentry

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 4, Software carpentry http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-4-software-carpentry This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021 Data management FAIR data Data analysis, Software Carpentry PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Infrastructure for storing and sharing data

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: FAIR data, Data management

Operations: Data handling, Analysis

Keywords: Data analysis, Data processing, Data sharing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Infrastructure for storing and sharing data http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-infrastructure-for-storing-and-sharing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 FAIR data Data management Data analysis, Data processing, Data sharing PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Tools for processing and analysing data

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data analysis, Data processing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Tools for processing and analysing data http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-tools-for-processing-and-analysing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Data analysis, Data processing PhD candidate
Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle

This material is part of a FAIR data stewardship follow up workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

Scientific topics: FAIR data, Data management

Operations: Analysis, Data handling

Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

Resource type: Slidedeck

Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle http://tess.elixir-uk.org/materials/workshop-fair-data-stewardship-for-the-2021-itn-proevlifecycle This material is part of a FAIR data stewardship follow up workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle) FAIR data Data management Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse PhD candidate
Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle

This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

Scientific topics: FAIR data, Data management

Operations: Analysis, Data handling

Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

Resource type: Slidedeck

Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle http://tess.elixir-uk.org/materials/workshop-fair-data-stewardship-for-the-2020-itn-proevlifecycle This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle) FAIR data Data management Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse PhD candidate
Workshop FAIR & Data stewardship for the 2020 ITN COSMIC

This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine).

Scientific topics: Data management, FAIR data

Operations: Data handling, Analysis

Keywords: Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing

Resource type: Slidedeck

Workshop FAIR & Data stewardship for the 2020 ITN COSMIC http://tess.elixir-uk.org/materials/workshop-fair-data-stewardship-for-the-2020-itn-cosmic This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine). Data management FAIR data Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing PhD candidate
Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience.

Keywords: NeLS, Data storage, data sharing, Data analysis

Using the Norwegian e-infrastructure for Life Science and usegalaxy.no http://tess.elixir-uk.org/materials/using-the-norwegian-e-infrastructure-for-life-science-and-usegalaxy-no Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience. NeLS, Data storage, data sharing, Data analysis PhD postdocs Researchers
Reproducible analysis

Slides for the "Reproducible analysis" session of the "Best practices in research data management and stewardship" held regularly by ELIXIR-Luxembourg.

Scientific topics: Data architecture, analysis and design

Keywords: Workflows, Literate programming, Reproducible Science, Data analysis

Resource type: Presentation

Reproducible analysis http://tess.elixir-uk.org/materials/reproducible-analysis Slides for the "Reproducible analysis" session of the "Best practices in research data management and stewardship" held regularly by ELIXIR-Luxembourg. Pinar Alper Vilem Ded Data architecture, analysis and design Workflows, Literate programming, Reproducible Science, Data analysis PhD candidates Researchers
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects

CINECA webinar discussing when to bring compute to the data

Scientific topics: Data architecture, analysis and design

Keywords: Cloud computing, Data analysis, Standards, Translational research

Resource type: Video

Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects http://tess.elixir-uk.org/materials/data-gravity-in-the-life-sciences-lessons-learned-from-the-hca-and-other-federated-data-projects CINECA webinar discussing when to bring compute to the data Data architecture, analysis and design Cloud computing, Data analysis, Standards, Translational research
Reproducible data analysis with RStudio, github and Rmarkdown

Best practices for writing reproducible data-analysis Creating a reproducible and re-usable data-analysis environment with Rstudio Input: https://github.com/vibbits/RDM-LS Output: https://github.com/vibbits/RDM-LS-solution

Scientific topics: Data management, Data architecture, analysis and design

Keywords: Data analysis

Resource type: Presentation

Reproducible data analysis with RStudio, github and Rmarkdown http://tess.elixir-uk.org/materials/reproducible-data-analysis-with-rstudio-github-and-rmarkdown Best practices for writing reproducible data-analysis Creating a reproducible and re-usable data-analysis environment with Rstudio Input: https://github.com/vibbits/RDM-LS Output: https://github.com/vibbits/RDM-LS-solution Data management Data architecture, analysis and design Data analysis life scientists
FAIR principles applied to bioinformatics

Content of the training material: - Introduction to reproducibility - encapsulate a work environment (docker) - design and execute workflows (snakemake) - IFB infrastructure (Slurm cluster) - managing software versions (git) - managing software environments (conda) - ensure...

Keywords: FAIR, Reproducible Science, Open science, Data analysis, Data processing

Resource type: Training materials

FAIR principles applied to bioinformatics http://tess.elixir-uk.org/materials/fair-principles-applied-to-bioinformatics Content of the training material: - Introduction to reproducibility - encapsulate a work environment (docker) - design and execute workflows (snakemake) - IFB infrastructure (Slurm cluster) - managing software versions (git) - managing software environments (conda) - ensure the traceability of analysis using Notebooks. The training material is in french Hélène Chiapello FAIR, Reproducible Science, Open science, Data analysis, Data processing bioinformaticians software developers, bioinformaticians computational scientists Researchers
Data Carpentry in R

Data Carpentry workshops are for any researcher who has data they want to analyze, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. We will cover Data organization in spreadsheets, data...

Keywords: Data analysis, Data carpentry, SoftwareCarpentry

Resource type: course materials

Data Carpentry in R http://tess.elixir-uk.org/materials/data-carpentry-in-r Data Carpentry workshops are for any researcher who has data they want to analyze, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. We will cover Data organization in spreadsheets, data cleaning with OpenRefine, and learn how to use the statistical program R. If time allows we will also talk about Interacting with databases from R. Participants will be encouraged to help one another and to apply what they have learned to their own research problems Data analysis, Data carpentry, SoftwareCarpentry Anyone
InterMine user tutorial

A tutorial for end users of InterMine

Keywords: Data querying, Data analysis, Data download, FAIR

Resource type: Tutorial

InterMine user tutorial http://tess.elixir-uk.org/materials/intermine-user-tutorial A tutorial for end users of InterMine Data querying, Data analysis, Data download, FAIR Life Science Researchers Bioinformaticians
InterMine operator manual

Documentation on how to install, configure and operate an InterMine instance.

Keywords: Data integration, Data analysis, Data publishing, FAIR

Resource type: Documentation

InterMine operator manual http://tess.elixir-uk.org/materials/intermine-operator-manual Documentation on how to install, configure and operate an InterMine instance. Data integration, Data analysis, Data publishing, FAIR Bioinformaticians software engineers
Introduction to Analysing Repeated Measures Data

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, March 2016. These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Data analysis, Repeated measures, Roslin Institute

Introduction to Analysing Repeated Measures Data http://tess.elixir-uk.org/materials/introduction-to-analysing-repeated-measures-data Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, March 2016. These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute. Data analysis, Repeated measures, Roslin Institute
Interpretation and automated analysis of proteomic data

Interpretation and automated analysis of proteomic data by Karl R. Clauser

Scientific topics: Proteomics

Keywords: Proteomic data analysis, Data analysis

Interpretation and automated analysis of proteomic data http://tess.elixir-uk.org/materials/interpretation-and-automated-analysis-of-proteomic-data Interpretation and automated analysis of proteomic data by Karl R. Clauser Proteomics Proteomic data analysis, Data analysis
Metagenome data analysis Workshop, May 21-23, 2014

SciLifelab and AllBio are arranging a workshop on the analysis and interpretation of metagenomics data. In this workshop we will combine talks by experts in the field with practical tutorials guiding the participants in the analysis of representative datasets. Speakers: Lex Nederbragt, Oslo...

Keywords: Allbio, Assembly, Binning, Bioinformatics, Data analysis, Metagenomics

Metagenome data analysis Workshop, May 21-23, 2014 http://tess.elixir-uk.org/materials/metagenome-data-analysis-workshop-may-21-23-2014 SciLifelab and AllBio are arranging a workshop on the analysis and interpretation of metagenomics data. In this workshop we will combine talks by experts in the field with practical tutorials guiding the participants in the analysis of representative datasets. Speakers: Lex Nederbragt, Oslo University, Norway, Saskia Smits, Erasmus University Rotterdam, Netherlands, Joakim Larsson, Göteborg University, Sweden Paul Wilmes, University of Luxembourg, Luxembourg, Anders Andersson, SciLifeLab, Sweden Noan Le Bescot, UPMC (Tara expedition), France Tutorial supervisors: Ino de Bruijn, SciLifeLab, Sweden Johannes Alneberg, SciLifeLab, Sweden Luisa Hugerth, SciLifeLab, Sweden Johan Bengtsson, Göteborg University, Sweden Mikael Huss, SciLifeLab, Sweden Venue: Science for Life Laboratory, Tomtebodavägen 23A, 17165 Solna, Sweden Conference room Air/Fire, Gamma building Organisers: Mikael Huss (mikael.huss@scilifelab.se) Thomas Svensson (thomas.svensson@scilifelab.se) Allbio, Assembly, Binning, Bioinformatics, Data analysis, Metagenomics 2014-09-29 2017-10-09