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Keywords: Shell  or bioinformatics 


Making sense of genomic data: COVID-19 web-based bioinformatics

On this COG-Train course, you will learn the basics of bioinformatics concepts and explore the web-based tools used for viral data and sequencing analyses and learn to prepare data and share outputs and visualisations.

Keywords: bioinformatics, NGS bioinformatics, Next generation sequencing data analysis, covid-19, sars-cov-2, coronavirus, data-analysis, data visualization, genomics, Genomic data, pipelines, Galaxy, nexstrain

Resource type: FREE online course

Making sense of genomic data: COVID-19 web-based bioinformatics http://tess.elixir-uk.org/materials/making-sense-of-genomic-data-covid-19-web-based-bioinformatics On this COG-Train course, you will learn the basics of bioinformatics concepts and explore the web-based tools used for viral data and sequencing analyses and learn to prepare data and share outputs and visualisations. Our list of contributors can be found on our course page. bioinformatics, NGS bioinformatics, Next generation sequencing data analysis, covid-19, sars-cov-2, coronavirus, data-analysis, data visualization, genomics, Genomic data, pipelines, Galaxy, nexstrain scientific researchers, public health professionals and clinicians
Big Data, Genes, and Medicine

This course distills for you expert knowledge and skills mastered by professionals in Health Big Data Science and Bioinformatics. You will learn exciting facts about the human body biology and chemistry, genetics, and medicine that will be intertwined with the science of Big Data and skills to...

Keywords: life-sciences, computer-science, bioinformatics, algorithms

Big Data, Genes, and Medicine http://tess.elixir-uk.org/materials/big-data-genes-and-medicine This course distills for you expert knowledge and skills mastered by professionals in Health Big Data Science and Bioinformatics. You will learn exciting facts about the human body biology and chemistry, genetics, and medicine that will be intertwined with the science of Big Data and skills to harness the avalanche of data openly available at your fingertips and which we are just starting to make sense of. We’ll investigate the different steps required to master Big Data analytics on real datasets, including Next Generation Sequencing data, in a healthcare and biological context, from preparing data for analysis to completing the analysis, interpreting the results, visualizing them, and sharing the results. Needless to say, when you master these high-demand skills, you will be well positioned to apply for or move to positions in biomedical data analytics and bioinformatics. No matter what your skill levels are in biomedical or technical areas, you will gain highly valuable new or sharpened skills that will make you stand-out as a professional and want to dive even deeper in biomedical Big Data. It is my hope that this course will spark your interest in the vast possibilities offered by publicly available Big Data to better understand, prevent, and treat diseases. life-sciences, computer-science, bioinformatics, algorithms 2017-03-24
Bioinformatics: Life Sciences on Your Computer

What makes bioinformatics education exciting is that people of a variety of education levels can get started quickly, with just a computer and internet access.

Keywords: life-sciences, bioinformatics

Bioinformatics: Life Sciences on Your Computer http://tess.elixir-uk.org/materials/bioinformatics-life-sciences-on-your-computer What makes bioinformatics education exciting is that people of a variety of education levels can get started quickly, with just a computer and internet access. life-sciences, bioinformatics 2016-06-29
Bioinformatic Methods II

Large-scale biology projects such as the sequencing of the human genome and gene expression surveys using RNA-seq, microarrays and other technologies have created a wealth of data for biologists. However, the challenge facing scientists is analyzing and even accessing these data to extract useful...

Keywords: life-sciences, bioinformatics

Bioinformatic Methods II http://tess.elixir-uk.org/materials/bioinformatic-methods-ii Large-scale biology projects such as the sequencing of the human genome and gene expression surveys using RNA-seq, microarrays and other technologies have created a wealth of data for biologists. However, the challenge facing scientists is analyzing and even accessing these data to extract useful information pertaining to the system being studied. This course focuses on employing existing bioinformatic resources – mainly web-based programs and databases – to access the wealth of data to answer questions relevant to the average biologist, and is highly hands-on. Topics covered include multiple sequence alignments, phylogenetics, gene expression data analysis, and protein interaction networks, in two separate parts. The first part, Bioinformatic Methods I, dealt with databases, Blast, multiple sequence alignments, phylogenetics, selection analysis and metagenomics. This, the second part, Bioinformatic Methods II, will cover motif searching, protein-protein interactions, structural bioinformatics, gene expression data analysis, and cis-element predictions. This pair of courses is useful to any student considering graduate school in the biological sciences, as well as students considering molecular medicine. These courses are based on one taught at the University of Toronto to upper-level undergraduates who have some understanding of basic molecular biology. If you're not familiar with this, something like https://learn.saylor.org/course/bio101 might be helpful. No programming is required for this course although some command line work (though within a web browser) occurs in the 5th module. life-sciences, bioinformatics 2017-05-04
Bioinformatic Methods I

Large-scale biology projects such as the sequencing of the human genome and gene expression surveys using RNA-seq, microarrays and other technologies have created a wealth of data for biologists. However, the challenge facing scientists is analyzing and even accessing these data to extract useful...

Keywords: life-sciences, bioinformatics

Bioinformatic Methods I http://tess.elixir-uk.org/materials/bioinformatic-methods-i Large-scale biology projects such as the sequencing of the human genome and gene expression surveys using RNA-seq, microarrays and other technologies have created a wealth of data for biologists. However, the challenge facing scientists is analyzing and even accessing these data to extract useful information pertaining to the system being studied. This course focuses on employing existing bioinformatic resources – mainly web-based programs and databases – to access the wealth of data to answer questions relevant to the average biologist, and is highly hands-on. Topics covered include multiple sequence alignments, phylogenetics, gene expression data analysis, and protein interaction networks, in two separate parts. The first part, Bioinformatic Methods I (this one), deals with databases, Blast, multiple sequence alignments, phylogenetics, selection analysis and metagenomics. This, the second part, Bioinformatic Methods II, covers motif searching, protein-protein interactions, structural bioinformatics, gene expression data analysis, and cis-element predictions. This pair of courses is useful to any student considering graduate school in the biological sciences, as well as students considering molecular medicine. Both provide an overview of the many different bioinformatic tools that are out there. These courses are based on one taught at the University of Toronto to upper-level undergraduates who have some understanding of basic molecular biology. If you're not familiar with this, something like https://learn.saylor.org/course/bio101 might be helpful. No programming is required for this course. life-sciences, bioinformatics 2017-10-09
Filename Expansion

Filename Expansion from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/05-expansion.md.

Keywords: Shell

Filename Expansion http://tess.elixir-uk.org/materials/filename-expansion Filename Expansion from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/05-expansion.md. Shell Intermediate
Job Control

Job Control from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/04-job.md.

Keywords: Shell

Job Control http://tess.elixir-uk.org/materials/job-control Job Control from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/04-job.md. Shell Intermediate
Instructor's Guide

Instructor's Guide from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/guide.md.

Keywords: Shell

Instructor's Guide http://tess.elixir-uk.org/materials/instructor-s-guide Instructor's Guide from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/guide.md. Shell Intermediate
Variables

Variables from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/03-var.md.

Keywords: Shell

Variables http://tess.elixir-uk.org/materials/variables Variables from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/03-var.md. Shell Intermediate
Loops

Loops from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/04-loop.md.

Keywords: Shell

Loops http://tess.elixir-uk.org/materials/loops Loops from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/04-loop.md. Shell Novice
Creating Things

Creating Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/02-create.md.

Keywords: Shell

Creating Things http://tess.elixir-uk.org/materials/creating-things Creating Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/02-create.md. Shell Novice
Shell Scripts

Shell Scripts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/05-script.md.

Keywords: Shell

Shell Scripts http://tess.elixir-uk.org/materials/shell-scripts Shell Scripts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/05-script.md. Shell Novice
Pipes and Filters

Pipes and Filters from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/03-pipefilter.md.

Keywords: Shell

Pipes and Filters http://tess.elixir-uk.org/materials/pipes-and-filters Pipes and Filters from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/03-pipefilter.md. Shell Novice
Introducing the Shell

Introducing the Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/00-intro.md.

Keywords: Shell

Introducing the Shell http://tess.elixir-uk.org/materials/introducing-the-shell Introducing the Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/00-intro.md. Shell Novice
Finding Things

Finding Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/06-find.md.

Keywords: Shell

Finding Things http://tess.elixir-uk.org/materials/finding-things Finding Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/06-find.md. Shell Novice
Files and Directories

Files and Directories from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/01-filedir.md.

Keywords: Shell

Files and Directories http://tess.elixir-uk.org/materials/files-and-directories Files and Directories from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/01-filedir.md. Shell Novice
Permissions

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/01-perm.md.

Keywords: Shell

Permissions http://tess.elixir-uk.org/materials/permissions Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/01-perm.md. Shell Intermediate
Working Remotely

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/02-ssh.md.

Keywords: Shell

Working Remotely http://tess.elixir-uk.org/materials/working-remotely Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/02-ssh.md. Shell Intermediate