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18 materials found

Keywords: Shell  or Galaxy 


Making sense of genomic data: COVID-19 web-based bioinformatics

On this COG-Train course, you will learn the basics of bioinformatics concepts and explore the web-based tools used for viral data and sequencing analyses and learn to prepare data and share outputs and visualisations.

Keywords: bioinformatics, NGS bioinformatics, Next generation sequencing data analysis, covid-19, sars-cov-2, coronavirus, data-analysis, data visualization, genomics, Genomic data, pipelines, Galaxy, nexstrain

Resource type: FREE online course

Making sense of genomic data: COVID-19 web-based bioinformatics http://tess.elixir-uk.org/materials/making-sense-of-genomic-data-covid-19-web-based-bioinformatics On this COG-Train course, you will learn the basics of bioinformatics concepts and explore the web-based tools used for viral data and sequencing analyses and learn to prepare data and share outputs and visualisations. Our list of contributors can be found on our course page. bioinformatics, NGS bioinformatics, Next generation sequencing data analysis, covid-19, sars-cov-2, coronavirus, data-analysis, data visualization, genomics, Genomic data, pipelines, Galaxy, nexstrain scientific researchers, public health professionals and clinicians
Galaxy Proteomics workshop Prague 2018

Materials from the ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic

Scientific topics: Proteomics

Keywords: Galaxy, training, proteomics, eLearning, EeLP

Resource type: course materials, Training materials, Slides

Galaxy Proteomics workshop Prague 2018 http://tess.elixir-uk.org/materials/galaxy-proteomics-workshop-prague-2018 Materials from the ELIXIR workshop “Galaxy Proteomics workshop Prague 2018”, Oct 4-5 2018 at the IOCB, Prague, Czech Republic Andrea Argentini Frederik Coppens Pavel Dvorak Matthias Fahrner Melanie Foell Björn Grüning Martin Hubalek Hana Pergl Sustkova Marek Vrbacky Proteomics Galaxy, training, proteomics, eLearning, EeLP life scientists Researchers PhD Students
ELIXIR TtR course: Basic genomics using advanced analysis tools

Materials from the ELIXIR workshop “ELIXIR TtR course: Basic genomics using advanced analysis tools”, Nov 5-6 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia

Scientific topics: Genomics

Keywords: Galaxy, training, Genomics, eLearning, EeLP

Resource type: course materials, Training materials, Slides

ELIXIR TtR course: Basic genomics using advanced analysis tools http://tess.elixir-uk.org/materials/elixir-ttr-course-basic-genomics-using-advanced-analysis-tools Materials from the ELIXIR workshop “ELIXIR TtR course: Basic genomics using advanced analysis tools”, Nov 5-6 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia Christophe Antoniewski Olivier Inizan Genomics Galaxy, training, Genomics, eLearning, EeLP life scientists beginner bioinformaticians Postgraduate students
PhenoMeNal: accessing metabolomics workflows in Galaxy

A description of PhenoMeNal and when to use it, the creation of a cloud research environment and how to access Galaxy workflows via PhenoMeNal.

Scientific topics: Chemical biology, Metabolomics

Keywords: Galaxy

PhenoMeNal: accessing metabolomics workflows in Galaxy http://tess.elixir-uk.org/materials/phenomenal-accessing-metabolomics-workflows-in-galaxy A description of PhenoMeNal and when to use it, the creation of a cloud research environment and how to access Galaxy workflows via PhenoMeNal. Chemical biology Metabolomics Galaxy Beginners
Mapping reads on Galaxy server

This is the presentation of the first Galaxy workshop

Keywords: Galaxy, IBERS, Institute of Biological, Environmental and Rural Sciences

Mapping reads on Galaxy server http://tess.elixir-uk.org/materials/mapping-reads-on-galaxy-server This is the presentation of the first Galaxy workshop Galaxy, IBERS, Institute of Biological, Environmental and Rural Sciences
Filename Expansion

Filename Expansion from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/05-expansion.md.

Keywords: Shell

Filename Expansion http://tess.elixir-uk.org/materials/filename-expansion Filename Expansion from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/05-expansion.md. Shell Intermediate
Job Control

Job Control from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/04-job.md.

Keywords: Shell

Job Control http://tess.elixir-uk.org/materials/job-control Job Control from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/04-job.md. Shell Intermediate
Instructor's Guide

Instructor's Guide from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/guide.md.

Keywords: Shell

Instructor's Guide http://tess.elixir-uk.org/materials/instructor-s-guide Instructor's Guide from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/guide.md. Shell Intermediate
Variables

Variables from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/03-var.md.

Keywords: Shell

Variables http://tess.elixir-uk.org/materials/variables Variables from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/03-var.md. Shell Intermediate
Loops

Loops from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/04-loop.md.

Keywords: Shell

Loops http://tess.elixir-uk.org/materials/loops Loops from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/04-loop.md. Shell Novice
Creating Things

Creating Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/02-create.md.

Keywords: Shell

Creating Things http://tess.elixir-uk.org/materials/creating-things Creating Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/02-create.md. Shell Novice
Shell Scripts

Shell Scripts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/05-script.md.

Keywords: Shell

Shell Scripts http://tess.elixir-uk.org/materials/shell-scripts Shell Scripts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/05-script.md. Shell Novice
Pipes and Filters

Pipes and Filters from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/03-pipefilter.md.

Keywords: Shell

Pipes and Filters http://tess.elixir-uk.org/materials/pipes-and-filters Pipes and Filters from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/03-pipefilter.md. Shell Novice
Introducing the Shell

Introducing the Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/00-intro.md.

Keywords: Shell

Introducing the Shell http://tess.elixir-uk.org/materials/introducing-the-shell Introducing the Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/00-intro.md. Shell Novice
Finding Things

Finding Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/06-find.md.

Keywords: Shell

Finding Things http://tess.elixir-uk.org/materials/finding-things Finding Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/06-find.md. Shell Novice
Files and Directories

Files and Directories from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/01-filedir.md.

Keywords: Shell

Files and Directories http://tess.elixir-uk.org/materials/files-and-directories Files and Directories from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/01-filedir.md. Shell Novice
Permissions

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/01-perm.md.

Keywords: Shell

Permissions http://tess.elixir-uk.org/materials/permissions Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/01-perm.md. Shell Intermediate
Working Remotely

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/02-ssh.md.

Keywords: Shell

Working Remotely http://tess.elixir-uk.org/materials/working-remotely Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/02-ssh.md. Shell Intermediate