Keywords: Shell or Data analysis
This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course
Day 3, March 22, 2021
https://www.aanmelder.nl/fair-data-stewardship-2021
https://helisacademy.com/en/data-analysis-stewardship
Topic: Electronic Lab Notebooks (ELN)
Scientific topics: Data management, FAIR data
Operations: Data handling
Keywords: Electronic Lab Notebooks (ELN), Data processing, Data analysis
Resource type: Slidedeck
This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course
Day 4, March 24, 2021
https://www.aanmelder.nl/fair-data-stewardship-2021
https://helisacademy.com/en/data-analysis-stewardship
Topic: data carpentry
Scientific topics: Data management, FAIR data
Operations: Data handling
Keywords: Data carpentry, Data analysis
Resource type: Slidedeck
This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course
Day 4, March 24, 2021
https://www.aanmelder.nl/fair-data-stewardship-2021
https://helisacademy.com/en/data-analysis-stewardship
Topic: software carpentry
Scientific topics: Data management, FAIR data
Operations: Data handling
Keywords: Data analysis, Software Carpentry
Resource type: Slidedeck
This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course
Day 2, March 18, 2021
https://www.aanmelder.nl/fair-data-stewardship-2021
https://helisacademy.com/en/data-analysis-stewardship
Topic: infrastructure for storing and sharing...
Scientific topics: FAIR data, Data management
Operations: Data handling, Analysis
Keywords: Data analysis, Data processing, Data sharing
Resource type: Slidedeck
This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course
Day 2, March 18, 2021
https://www.aanmelder.nl/fair-data-stewardship-2021
https://helisacademy.com/en/data-analysis-stewardship
Topic: tools for processing and analysing data
Scientific topics: Data management, FAIR data
Operations: Analysis, Data handling
Keywords: Data analysis, Data processing
Resource type: Slidedeck
This material is part of an follow up FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)
FAIR and data stewardship - November 3th, 2021
Organiser: Dutch Techcentre For Life Sciences, DTL
Setup: Virtual meeting...
Scientific topics: FAIR data, Data management
Operations: Analysis, Data handling
Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse
Resource type: Slidedeck
This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)
FAIR and data stewardship - October 14th, 2020
Organiser: Dutch Techcentre For Life Sciences, DTL
Setup: Virtual meeting...
Scientific topics: FAIR data, Data management
Operations: Analysis, Data handling
Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse
Resource type: Slidedeck
This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine)
FAIR and data stewardship - September 18th, 2020
Organiser: PO5 (Dutch Techcentre For Life Sciences, DTL)
Setup: Virtual...
Scientific topics: Data management, FAIR data
Operations: Data handling, Analysis
Keywords: Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing
Resource type: Slidedeck
The topic is on how you can use NeLS (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in...
Keywords: NeLS, Data storage, data sharing, Data analysis
Slides for the "Reproducible analysis" session of the "Best practices in research data management and stewardship" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data architecture, analysis and design
Keywords: Workflows, Literate programming, Reproducible Science, Data analysis
Resource type: Presentation
We live in an era of cloud computing. Many of the services in the life sciences are keenly planning cloud transformations, seeking to create globally distributed ecosystems of harmonised data based on standards from organisations like GA4GH. CINECA faces similar challenges, gathering cohort...
Scientific topics: Data architecture, analysis and design
Keywords: Cloud computing, Data analysis, Standards, Translational research
Resource type: Video
Best practices for writing reproducible data-analysis
Creating a reproducible and re-usable data-analysis environment with Rstudio
Input: https://github.com/vibbits/RDM-LS
Output: https://github.com/vibbits/RDM-LS-solution
Scientific topics: Data management, Data architecture, analysis and design
Keywords: Data analysis
Resource type: Presentation
The French Institute of Bioinformatics (IFB) has organised in partnership with the Institute of Integrative Biology (I2BC) a training course for bioinformaticians and biostatisticians wishing to implement the "FAIR" principles (Findable, Accessible, Interoperable, Reusable) in their analysis and...
Keywords: FAIR, Reproducible Science, Open science, Data analysis, Data processing
Resource type: Training materials
Data Carpentry workshops are for any researcher who has data they want to analyze, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. We will cover Data organization in spreadsheets, data...
Keywords: Data analysis, Data carpentry, SoftwareCarpentry
Resource type: course materials
InterMine integrates biological data sources, making it easy to query and analyse data. It is a downloadable platform that operators can install and integrate with their own systems.
InterMine is a generic model-based platform that is used to provide data to end users in many different life...
Keywords: Data querying, Data analysis, Data download, FAIR
Resource type: Tutorial
InterMine integrates biological data sources, making it easy to query and analyse data. It is a downloadable platform that operators can install and integrate with their own systems.
InterMine is a generic model-based platform that is used to provide data to end users in many different life...
Keywords: Data integration, Data analysis, Data publishing, FAIR
Resource type: Documentation
Introduction
Potential Analysis Approaches
Mixed Model Analysis
Covariance Pattern Model
Example – Covariance Pattern Model
Significance Testing for Fixed Effects
Model Checking
Random Coefficients (Slopes) Models
Example – Random Coefficients...
Keywords: Data analysis, Repeated measures, Roslin Institute
Interpretation and automated analysis of proteomic data by Karl R. Clauser
Scientific topics: Proteomics
Keywords: Proteomic data analysis, Data analysis
Filename Expansion from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/05-expansion.md.
Keywords: Shell
Keywords: Shell
Instructor's Guide from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/guide.md.
Keywords: Shell
Keywords: Shell
Creating Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/02-create.md.
Keywords: Shell
Shell Scripts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/05-script.md.
Keywords: Shell
Pipes and Filters from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/03-pipefilter.md.
Keywords: Shell
Introducing the Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/00-intro.md.
Keywords: Shell
Finding Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/06-find.md.
Keywords: Shell
Files and Directories from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/01-filedir.md.
Keywords: Shell
Keywords: Shell