Register training material
13 materials found

Keywords: Extras  or NGS 


Docker version of Welsh Gene Park NGS course

Docker version of Welsh Gene Park NGS course

Keywords: NGS, IFR, Institute of Food Research, Quadram Institute

Docker version of Welsh Gene Park NGS course http://tess.elixir-uk.org/materials/docker-version-of-welsh-gene-park-ngs-course Docker version of Welsh Gene Park NGS course NGS, IFR, Institute of Food Research, Quadram Institute
IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis

The IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis course

Keywords: NGS, Command line, IFR, Institute of Food Research, Quadram Institute

IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis http://tess.elixir-uk.org/materials/ifr-dockerised-version-of-the-welsh-genepark-s-introduction-to-command-line-ngs-analysis The IFR Dockerised version of the Welsh Genepark's Introduction to Command-line NGS Analysis course NGS, Command line, IFR, Institute of Food Research, Quadram Institute
Working Remotely

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md.

Keywords: Extras

Working Remotely http://tess.elixir-uk.org/materials/working-remotely-ef26eae5-c8f2-4ad5-9622-3732cafbbe33 Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md. Extras Novice
Permissions

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md.

Keywords: Extras

Permissions http://tess.elixir-uk.org/materials/permissions-ec9e2168-7558-4aef-b417-1627204b2c2f Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md. Extras Novice
Code Review

Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md.

Keywords: Extras

Code Review http://tess.elixir-uk.org/materials/code-review Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md. Extras Novice
Shell Variables

Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md.

Keywords: Extras

Shell Variables http://tess.elixir-uk.org/materials/shell-variables Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md. Extras Novice
Exceptions

Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md.

Keywords: Extras

Exceptions http://tess.elixir-uk.org/materials/exceptions Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md. Extras Novice
Forking a Repository

Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md.

Keywords: Extras

Forking a Repository http://tess.elixir-uk.org/materials/forking-a-repository Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md. Extras Novice
Numbers

Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md.

Keywords: Extras

Numbers http://tess.elixir-uk.org/materials/numbers Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md. Extras Novice
Branching in Git

Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md.

Keywords: Extras

Branching in Git http://tess.elixir-uk.org/materials/branching-in-git Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md. Extras Novice 2013-08-22
Manual Pages

Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md.

Keywords: Extras

Manual Pages http://tess.elixir-uk.org/materials/manual-pages Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md. Extras Novice
Why I Teach

Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md.

Keywords: Extras

Why I Teach http://tess.elixir-uk.org/materials/why-i-teach Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md. Extras Novice
3-day hands-on NGS workshop

This document is the trainee exercise booklet for a 3 day hands-on Next Generation Sequencing workshop developed by Bioplatforms Australia, CSIRO and EMBL-EBI.  This workshop is aimed at bench biologists, PhD students or early career postdoctoral researchers or those new to the analysis of NGS...

Keywords: NGS, ChIPSeq, De novo genome assembly, RNASeq

3-day hands-on NGS workshop http://tess.elixir-uk.org/materials/3-day-hands-on-ngs-workshop This document is the trainee exercise booklet for a 3 day hands-on Next Generation Sequencing workshop developed by Bioplatforms Australia, CSIRO and EMBL-EBI.  This workshop is aimed at bench biologists, PhD students or early career postdoctoral researchers or those new to the analysis of NGS data and assumes no prior knowledge of bioinformatics. This course covers the following topics: data quality control, read alignment, ChIPSeq, RNASeq and de novo assembly. The workshop starts with the Intro to the shell material from Software Carpentry (http://software-carpentry.org/v4/shell/index.html).  Introductory lectures on each topic are presented before trainees move on that topic. The workshop has been delivered a number of times in different cities in Australia to date, in a roadshow style, and is designed to run on virtual machines on the Australian research cloud. Trainees then use NoMachine NX client to provide a remote desktop like connection to their own dedicated VM for the duration of of the workshop.  Various contributors made this workshop possible and they are credited in the introduction to each section. NGS, ChIPSeq, De novo genome assembly, RNASeq Bench biologists Life Science Researchers PhD students postdocs 2014-01-17 2017-10-09