Training materials
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Video
Model Creation using COPASI
• beginnerSimulation experiment Modelling and simulation Visualisation SystemsBiology ComputationalBiology Computational modelling modeling Biomodelling Model Kinetic modeling COPASI -
Tutorial
Tutorials on COBREXA
•• intermediatePersonalised medicine Simulation experiment Modelling and simulation cell-level simulations Biomodelling HPC -
Tutorial
Tutorial on CellNOpt
•• intermediatePersonalised medicine Simulation experiment Molecular interactions, pathways and networks Transcription factors and regulatory sites Modelling and simulation HPC Biomodelling Signalling -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Tutorial
Constraint-based reconstruction and analysis toolbox tutorials
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Introduction to Linux: The operating system for bioinformatics
• beginnerJohn Innes Centre JIC -
Python for Biologists: Programming for Scientific Computing
• beginnerSoftware engineering Python for Biologists John Innes Centre JIC -
Introduction to R: A software environment for statistical computing
• beginnerStatistics and probability Software engineering John Innes Centre JIC -
Introduction to Perl: Programming for bioinformatics
• beginnerSoftware engineering perl John Innes Centre JIC -
Computational Bioimaging: From images to data
• beginnerImaging Bioimaging John Innes Centre JIC