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Keywords: Extras  or Communication 

Keynote on Visual Design Principles

Martin Krzywinski (http://mkweb.bcgsc.ca/) gives a great primer on the key principles of effective visual design in biological sciences. During the talk he highlights the principles with examples from various peer-reviewed publications and discusses the practical aspects of effective figure...

Keywords: Genome, HCI, Information visualisation, Communication

Resource type: Video

Keynote on Visual Design Principles http://tess.elixir-uk.org/materials/keynote-on-visual-design-principles Martin Krzywinski (http://mkweb.bcgsc.ca/) gives a great primer on the key principles of effective visual design in biological sciences. During the talk he highlights the principles with examples from various peer-reviewed publications and discusses the practical aspects of effective figure design.This video was filmed and distributed with permission under a Creative Commons license. Created at: VIZBI 2013. Martin Krzywinski Genome, HCI, Information visualisation, Communication 2017-01-31
Keynote on Communicating Science Visually

Felice Frankel delivers her keynote address in which she talks about how to effectively use visual tools to communicate science.This video was filmed and distributed with permission under a Creative Commons license. Created at: VIZBI 2013.

Keywords: Communication

Resource type: Video

Keynote on Communicating Science Visually http://tess.elixir-uk.org/materials/keynote-on-communicating-science-visually Felice Frankel delivers her keynote address in which she talks about how to effectively use visual tools to communicate science.This video was filmed and distributed with permission under a Creative Commons license. Created at: VIZBI 2013. Communication 2017-01-31
Making Science Beautiful

In this presentation David Goodsell reveals the beauty of science through his scientific and artistic endeavors. He explores the visual techniques which have been used to communicate the detail of the molecular biology world to different audiences.David Goodsell (http://bit.ly/DGoodsell) is an...

Keywords: Molecular, Communication

Resource type: Video

Making Science Beautiful http://tess.elixir-uk.org/materials/making-science-beautiful In this presentation David Goodsell reveals the beauty of science through his scientific and artistic endeavors. He explores the visual techniques which have been used to communicate the detail of the molecular biology world to different audiences.David Goodsell (http://bit.ly/DGoodsell) is an Associate Professor of Molecular Biology at the Scripps Institute, California Campus. Created at: VIZBI 2014. Molecular, Communication 2017-01-31
Revise and Redraw—Visual Design Principles for Scientific Data

Martin Krzywinski's keynote from 1st BiVi in 2014. He discusses visual design principles and communicating effectively in pictures.This talk distills core concepts of information design into practical guidelines for creating scientific figures. We will explain how to generate visual vocabularies...

Keywords: HCI, Communication

Resource type: Video

Revise and Redraw—Visual Design Principles for Scientific Data http://tess.elixir-uk.org/materials/revise-and-redraw-visual-design-principles-for-scientific-data Martin Krzywinski's keynote from 1st BiVi in 2014. He discusses visual design principles and communicating effectively in pictures.This talk distills core concepts of information design into practical guidelines for creating scientific figures. We will explain how to generate visual vocabularies with graphical elements, combine them into phrases, and package them into a complete figure, the visual equivalent of a paragraph. We show how effective designs for this composition are underpinned by conclusions from studies in visual perception and awareness. Created at: 1st BiVi Annual Meeting. Martin Krzywinski HCI, Communication 2017-02-02
Art and Science: A partnership catalyzing discovery in biomedicine

A 3rd BiVi 2017 Keynote Presentation by Bang Wong, Broad Institute of MIT & Harvard and Department of Art as Applied to Medicine, Johns Hopkins University School of MedicineChaired by: Geoff BartonThe data generated by the biomedical research community hold tremendous potential to inform our...

Scientific topics: Phylogenetics, Pathway or network

Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Communication, Information visualisation

Resource type: Video

Art and Science: A partnership catalyzing discovery in biomedicine http://tess.elixir-uk.org/materials/art-and-science-a-partnership-catalyzing-discovery-in-biomedicine A 3rd BiVi 2017 Keynote Presentation by Bang Wong, Broad Institute of MIT & Harvard and Department of Art as Applied to Medicine, Johns Hopkins University School of MedicineChaired by: Geoff BartonThe data generated by the biomedical research community hold tremendous potential to inform our understanding and treatment of disease. The challenge is to ensure that technical and non-technical researchers can access, use and learn from this wealth of data and analytical resources. Bang will present examples of solutions developed at the Broad Institute that draw on art and design to enable scientific discovery.Bang Wong is the creative director of the Broad Institute of MIT & Harvard and an adjunct assistant professor in the Department of Art as Applied to Medicine at the Johns Hopkins University School of Medicine. His work focuses on the design and development of computation-visualization tools to meet the analytical challenges of research data. He leads the data visualization initiative at the Broad and is the founding author of Points of View published by Nature Methods, a series of articles that focus on the fundamental aspects of data presentation in science. Created at: 3rd BiVi Annual Meeting (2017). Bang Wong Phylogenetics Pathway or network Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Communication, Information visualisation 2017-05-12
From Visual Exploration of Biomedical Data to Storytelling and Back Again

A 3rd BiVi 2017 Keynote Presentation by Marc Streit who discusses visual exploration and sharing discoveries with examples from the Caleydo project.Chaired by Tom FreemanThe primary goal of visual data exploration tools is to enable the discovery of new insights. To justify and reproduce...

Keywords: Communication, Information visualisation

Resource type: Video

From Visual Exploration of Biomedical Data to Storytelling and Back Again http://tess.elixir-uk.org/materials/from-visual-exploration-of-biomedical-data-to-storytelling-and-back-again A 3rd BiVi 2017 Keynote Presentation by Marc Streit who discusses visual exploration and sharing discoveries with examples from the Caleydo project.Chaired by Tom FreemanThe primary goal of visual data exploration tools is to enable the discovery of new insights. To justify and reproduce insights, the discovery process needs to be documented and communicated. A common approach to documenting and presenting findings is to capture visualizations as images or videos. Images, however, are insufficient for telling the story of a visual discovery, as they lack full provenance information and context. Videos are difficult to produce and edit, particularly due to the nonlinear nature of the exploration process. Most importantly, however, neither approach provides the opportunity to return to any point in the exploration in order to review the state of the visualization in detail or to conduct additional analyses.In this talk, Marc introduces their efforts to more tightly integrate biomedical data exploration with the presentation of discoveries. Based on provenance data captured during the exploration process, users can extract key steps, add annotations, and author 'Vistories', visual stories based on the history of the exploration. These Vistories can be shared for others to view, but also to retrace and extend the original analysis. Marc demonstrates how such methods can increase the reproducibility of cancer research and drug discovery.The presented work is part of the Caleydo project, which is a long-running collaboration between JKU Linz, Harvard University and the University of Utah.Marc Streit is a tenured Associate Professor at the Institute of Computer Graphics at Johannes Kepler University Linz where he leads the Visual Data Science group. He finished his PhD at the Institute for Computer Graphics and Vision at Graz University of Technology in early 2011 and moved to Linz later that year. In 2012 he was a visiting researcher at the Center for Biomedical Informatics (CBMI) at Harvard Medical School. As part of a Fulbright scholarship for research and lecturing he was a visiting professor at the Visual Computing Group at Harvard Paulson School in 2014. Marc also teaches courses at the Imperial College Business School and Salzburg University of Applied Sciences.His scientific areas of interest include visualization, visual analytics, and biological data visualization, where he is particularly interested in the integrated analysis of large heterogeneous data. Together with his team he develops novel visual analysis tools for cancer research, drug discovery, and other biomedical applications. Most of his research is embedded in the open-source project Caleydo, where he is one of the project leaders and founding-members. Since 2016 he is a CEO of the JKU spin-off company datavisyn.Marc won Best Paper Awards at InfoVis'13, BioVis’12, InfoVis’11, GI’10 and Honorable Mention Awards at EuroVis'16, CHI'14, InfoVis'14 and EuroVis’12. He is a co-author of the Nature Methods Points of View column. In 2013 he co-edited the Special Issue on Visual Analytics in the IEEE Computer journal. Additionally, he actively contributes to the scientific community by serving on the organizing and program committee of several scientific events as well as by acting as a reviewer for high-quality journals and conferences. He was program chair of the IEEE Visualization in Data Science Symposium and papers and now general chair of BioVis, the Symposium on Biological Data Visualization. Created at: 3rd BiVi Annual Meeting (2017). Prof. Marc Streit Communication, Information visualisation 2017-05-15
Working Remotely

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md.

Keywords: Extras

Working Remotely http://tess.elixir-uk.org/materials/working-remotely-ef26eae5-c8f2-4ad5-9622-3732cafbbe33 Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md. Extras Novice
Permissions

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md.

Keywords: Extras

Permissions http://tess.elixir-uk.org/materials/permissions-ec9e2168-7558-4aef-b417-1627204b2c2f Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md. Extras Novice
Code Review

Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md.

Keywords: Extras

Code Review http://tess.elixir-uk.org/materials/code-review Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md. Extras Novice
Shell Variables

Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md.

Keywords: Extras

Shell Variables http://tess.elixir-uk.org/materials/shell-variables Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md. Extras Novice
Exceptions

Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md.

Keywords: Extras

Exceptions http://tess.elixir-uk.org/materials/exceptions Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md. Extras Novice
Forking a Repository

Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md.

Keywords: Extras

Forking a Repository http://tess.elixir-uk.org/materials/forking-a-repository Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md. Extras Novice
Numbers

Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md.

Keywords: Extras

Numbers http://tess.elixir-uk.org/materials/numbers Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md. Extras Novice
Branching in Git

Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md.

Keywords: Extras

Branching in Git http://tess.elixir-uk.org/materials/branching-in-git Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md. Extras Novice 2013-08-22
Manual Pages

Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md.

Keywords: Extras

Manual Pages http://tess.elixir-uk.org/materials/manual-pages Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md. Extras Novice
Why I Teach

Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md.

Keywords: Extras

Why I Teach http://tess.elixir-uk.org/materials/why-i-teach Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md. Extras Novice