Register training material
27 materials found

Keywords: Biomedical Literature  or FAIR data 


BioData.pt | ELIXIR PT Training Data Stewards for Life Sciences - Intro Course

BioData.pt | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations.

Scientific topics: Data management, Open science, FAIR data

Keywords: Data management plan, data-science, data-analysis, Data Integration, training, open science, data FAIRness, FAIR data, FAIR, FAIR principles, life sciences, data life cycle

Resource type: Training materials

BioData.pt | ELIXIR PT Training Data Stewards for Life Sciences - Intro Course http://tess.elixir-uk.org/materials/biodata-pt-elixir-pt-training-data-stewards-for-life-sciences-intro-course BioData.pt | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations. Data management Open science FAIR data Data management plan, data-science, data-analysis, Data Integration, training, open science, data FAIRness, FAIR data, FAIR, FAIR principles, life sciences, data life cycle Researchers
DSW Workshop for Finnish Data Support Personnel

Presentation from DSW Workshop to explain what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. It also briefly explains the versability of DSW, possibilities of integrations with...

Scientific topics: Data management

Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data

Resource type: Presentation

DSW Workshop for Finnish Data Support Personnel http://tess.elixir-uk.org/materials/dsw-workshop-for-finnish-data-support-personnel Presentation from DSW Workshop to explain what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. It also briefly explains the versability of DSW, possibilities of integrations with other systems in institutions, and other customizations. Data management DMP, DMP tools, data stewardship, FAIR, FAIR data Researchers data stewards
DS Wizard and its Use

This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...

Scientific topics: Data management

Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data

Resource type: Presentation

DS Wizard and its Use http://tess.elixir-uk.org/materials/ds-wizard-and-its-use This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind [Data Stewardship Wizard](https://ds-wizard.org), and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make data management planning easier and more efficient, as well as possibilities of customization and integrations with other systems in institutions. Data management DMP, DMP tools, data stewardship, FAIR, FAIR data Researchers data stewards
Helis Academy course FAIR data stewardship 2021, Day 6, FAIR Data

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021

Scientific topics: FAIR data, Data management

Operations: Data handling

Keywords: FAIR data, Data management planning, Metadata

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 6, FAIR Data http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-6-fair-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021 FAIR data Data management FAIR data, Data management planning, Metadata PhD candidates
Helis Academy course FAIR data stewardship 2021, Day 6, Metadata FAIR Data Point

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR data, Metadata

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 6, Metadata FAIR Data Point http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-6-metadata-fair-data-point This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021 Data management FAIR data FAIR data, Metadata PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Informed consent procedures

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Informed consent procedures, Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Informed consent procedures http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-informed-consent-procedures This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Informed consent procedures, Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 5, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR data, Data management planning

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 5, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-5-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021 Data management FAIR data FAIR data, Data management planning PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 4, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR data, Data management planning

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 4, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-4-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021 Data management FAIR data FAIR data, Data management planning PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 5, Preregistration

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 5, Preregistration http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-5-preregistration This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 6, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 6, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-6-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 3, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 3, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-3-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Institute requirements

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data preserving, Data reuse, Data management planning, Data sharing, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Institute requirements http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-institute-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data preserving, Data reuse, Data management planning, Data sharing, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Publisher requirements

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data management planning, FAIR data, Data preserving, Data sharing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Publisher requirements http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-publisher-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data management planning, FAIR data, Data preserving, Data sharing PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Funder requirements

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Funder requirements http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-funder-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Introduction Landscape Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: FAIR data, Data management

Operations: Data handling, Analysis

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Introduction Landscape Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-introduction-landscape-wrap-up-f41b3204-b9e4-486c-90cd-c2a073c0b785 This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 FAIR data Data management Data management planning, FAIR data PhD candidate
Ten simple rules for making training materials FAIR

Sharing, reusing and reproducing data, software and other digital objects are the basis for open science practices, and to ease this the scientific community has developed the Findable, Accessible, Interoperable and Reusable (FAIR) principles. FAIR principles are however not so simple to...

Scientific topics: FAIR data

Operations: Data handling

Keywords: FAIR data, FAIR, ELIXIR-CONVERGE

Resource type: Video

Ten simple rules for making training materials FAIR http://tess.elixir-uk.org/materials/ten-simple-rules-for-making-training-materials-fair Sharing, reusing and reproducing data, software and other digital objects are the basis for open science practices, and to ease this the scientific community has developed the Findable, Accessible, Interoperable and Reusable (FAIR) principles. FAIR principles are however not so simple to understand and adopt, and may be quite convoluted for some. The ELIXIR Training Platform in cooperation with other associated partner ZB MED has put together a Ten Simple Rules for Making Training Materials FAIR which simplify the FAIR principles by breaking them down into very practical steps. This webinar introduced these ten rules and discussed the challenges and ideas to put them into practice. FAIR data FAIR data, FAIR, ELIXIR-CONVERGE PhD students Post Docs Undergraduate students
Making cohort data FAIR

CINECA webinar about how to make data from cohort studies FAIR

Scientific topics: Data management, Data integration and warehousing

Keywords: FAIR data, Cohort data, Ontologies, Standards

Resource type: Video

Making cohort data FAIR http://tess.elixir-uk.org/materials/making-cohort-data-fair CINECA webinar about how to make data from cohort studies FAIR Data management Data integration and warehousing FAIR data, Cohort data, Ontologies, Standards
Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality?

CINECA webinar about the basics of FAIR health data.

Scientific topics: Data management

Keywords: FAIR data, Health data, Open science

Resource type: Video

Introduction to FAIR principles - Open science through FAIR health data networks: dream or reality? http://tess.elixir-uk.org/materials/introduction-to-fair-principles-open-science-through-fair-health-data-networks-dream-or-reality CINECA webinar about the basics of FAIR health data. Data management FAIR data, Health data, Open science
Discovering scientific evidence using Europe PMC SciLite annotation

For readers of life sciences journal articles, annotations make it easier to scan an article and get a quick overview, find key concepts, and discover evidence, such as gene disease associations or molecular interactions. This webinar will demonstrate how to use the power of text mining to find...

Keywords: Biomedical Literature, Annotations, Literature search, SciLite, Protein structure viewer, Chemical viewer

Resource type: Life Sciences Literature Database

Discovering scientific evidence using Europe PMC SciLite annotation http://tess.elixir-uk.org/materials/discovering-scientific-evidence-using-europe-pmc-scilite-annotation For readers of life sciences journal articles, annotations make it easier to scan an article and get a quick overview, find key concepts, and discover evidence, such as gene disease associations or molecular interactions. This webinar will demonstrate how to use the power of text mining to find evidence in scientific literature. Who is this course for? This webinar is suitable for scientists, database curators or anyone who wishes to learn more about how to use annotations. Outcomes By the end of the webinar you will be able to: Explore Europe PubMed Central Use text mining for scientific literature searches Aravind Venkatesan Biomedical Literature, Annotations, Literature search, SciLite, Protein structure viewer, Chemical viewer
Finding the data behind research publications with Europe PMC

This webinar will explain how to use Europe PMC to find relevant articles in your research field and locate the linked data containing facts and evidence to support your hypothesis. Europe PMC is an open biomedical literature database including PubMed indexed articles, preprints,...

Keywords: Biomedical Literature, Data links, databases, External links

Resource type: Life Sciences Literature Database

Finding the data behind research publications with Europe PMC http://tess.elixir-uk.org/materials/finding-the-data-behind-research-publications-with-europe-pmc This webinar will explain how to use Europe PMC to find relevant articles in your research field and locate the linked data containing facts and evidence to support your hypothesis. Europe PMC is an open biomedical literature database including PubMed indexed articles, preprints, micropublications and more. Who is this course for? This webinar is aimed at scientists with an interest in learning more about the data-rich literature search tools provided by Europe PMC. No prior knowledge of bioinformatics is required, but an undergraduate level understanding of biology would be useful. Michael Parkin Biomedical Literature, Data links, databases, External links
Introduction to FAIR principles

Slides for the "Introduction to FAIR Principles" session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg.

Keywords: FAIR data

Resource type: Presentation

Introduction to FAIR principles http://tess.elixir-uk.org/materials/introduction-to-fair-principles Slides for the "Introduction to FAIR Principles" session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg. Roland Krause FAIR data Researchers data steward / data manager PhD candidates Master students
Navigating the data-rich literature: finding evidence in biomedical publications

In the age of data‐driven science, discovering all the data associated with a study can be tricky. In this webinar, we will demonstrate how to locate primary data in a publication, find facts and evidence to support your hypothesis, and scan a paper for important biological concepts using tools...

Keywords: Europe PMC, Biomedical Literature, Literature search

Resource type: Webinar

Navigating the data-rich literature: finding evidence in biomedical publications http://tess.elixir-uk.org/materials/navigating-the-data-rich-literature-finding-evidence-in-biomedical-publications In the age of data‐driven science, discovering all the data associated with a study can be tricky. In this webinar, we will demonstrate how to locate primary data in a publication, find facts and evidence to support your hypothesis, and scan a paper for important biological concepts using tools provided by Europe PMC. This webinar was recorded on 4th October 2017. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded here. This webinar is aimed at scientists with an interest in learning more about the literature search tools provided by Europe PMC. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. If you would like to learn more about Europe PMC have a look at our other webinar on Europe PMC: get the most from literature searches and our Europe PMC: Quick tour. See the EMBL-EBI training pages for a list of upcoming webinars. Europe PMC, Biomedical Literature, Literature search
Europe PMC: Services for academic authors

Researchers are often asked to maintain an up-to-date publication list, whether for job applications, tenure evaluations, or grant proposals. An easy way to do this is by using your ORCID iD and linking it to your published papers. An ORCID is a unique identifier - personalised number that is...

Keywords: Europe PMC, ORCID, Biomedical Literature

Resource type: Webinar

Europe PMC: Services for academic authors http://tess.elixir-uk.org/materials/europe-pmc-services-for-academic-authors Researchers are often asked to maintain an up-to-date publication list, whether for job applications, tenure evaluations, or grant proposals. An easy way to do this is by using your ORCID iD and linking it to your published papers. An ORCID is a unique identifier - personalised number that is assigned to you when you register. By using your ORCID in addition to your name you can make sure that you are easily distinguishable from other researchers with the same name, keep track of your work through name changes, and even pull together different kinds of achievements, like grant awards, training, etc. This video shows how you can register for an ORCID, add your publications in three easy steps to build your digital CV, and how to get a personal author profile page that showcases your publications and citations. This webinar was recorded on 7th of August 2017. It is best viewed in full-screen mode using Google Chrome. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. Europe PMC, ORCID, Biomedical Literature
Effective Literature Research with Europe PMC

Following the latest developments in your scientific field requires thorough and frequent literature research. In this webinar, we will show how to find and access relevant scientific literature using Europe PMC, an open biomedical literature database, part of PubMed Central International. We...

Keywords: Europe PMC, Biomedical Literature, Literature search

Resource type: Webinar

Effective Literature Research with Europe PMC http://tess.elixir-uk.org/materials/effective-literature-research-with-europe-pmc Following the latest developments in your scientific field requires thorough and frequent literature research. In this webinar, we will show how to find and access relevant scientific literature using Europe PMC, an open biomedical literature database, part of PubMed Central International. We will cover searches by topic and author, searches for associated research data, as well as advanced options for building complex queries. This webinar was recorded on 30 May 2018. It is best viewed in full-screen mode using Google Chrome. The slides from this webinar can be downloaded here. To learn more about searching grant information and on managing, exporting and saving searches you can watch our previous webinar Europe PMC: get the most from literature searches. You will find more information about Europe PMCs API service in our webinar Europe PMC, programmatically. You can also try our Europe PMC: Quick Tour. See the EMBL-EBI training pages for a list of upcoming webinars. This webinar is aimed at scientists who want to optimise their literature searches. No prior knowledge of bioinformatics is required, but an undergraduate-level understanding of biology would be useful. Europe PMC, Biomedical Literature, Literature search Scientists who want to optimise their literature searches
Text mining: Key concepts and applications

EMBL-EBI presents this talk on an introduction to text mining and its applications in service provision. The 1st part of this talk focuses on what text mining is and some of the methods and available tools. The 2nd part looks at how to find articles on Europe PMC - a free literature resource for...

Keywords: Literature search, Text mining, Europe PMC, Biomedical Literature

Resource type: Webinar

Text mining: Key concepts and applications http://tess.elixir-uk.org/materials/text-mining-key-concepts-and-applications EMBL-EBI presents this talk on an introduction to text mining and its applications in service provision. The 1st part of this talk focuses on what text mining is and some of the methods and available tools. The 2nd part looks at how to find articles on Europe PMC - a free literature resource for biomedical and health researchers - and how to build your own text mining pipeline. The final part gives a nice case study showing how Europe PMC's pipeline was integrated into a new drug target validation platform called Open Targets (previously CTTV). Literature search, Text mining, Europe PMC, Biomedical Literature
Extracting research evidence from publications

Bioinformaticians are routinely handling big data, including DNA, RNA, and protein sequence information. It’s time to treat biomedical literature as a dataset and extract valuable facts hidden in the millions of scientific papers. This webinar demonstrates how to access text-mined literature...

Keywords: Literature search, Biomedical Literature, Europe PMC, Text mining

Resource type: Webinar

Extracting research evidence from publications http://tess.elixir-uk.org/materials/extracting-research-evidence-from-publications Bioinformaticians are routinely handling big data, including DNA, RNA, and protein sequence information. It’s time to treat biomedical literature as a dataset and extract valuable facts hidden in the millions of scientific papers. This webinar demonstrates how to access text-mined literature evidence using Europe PMC Annotations API. We highlight several use cases, including linking diseases with potential treatment targets, or identifying which protein structures are cited along with a gene mutation. Literature search, Biomedical Literature, Europe PMC, Text mining Wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically.
Europe PMC, programmatically

Europe PMC is an open repository, providing access to worldwide biomedical literature, including articles, books, patents, and clinical guidelines. More than 32 million abstracts (27 million from PubMed) and 4 million full-text articles can be freely accessed through Europe PMC in a single...

Keywords: Literature search, Programmatic Access, Europe PMC, REST API, Biomedical Literature

Resource type: Webinar

Europe PMC, programmatically http://tess.elixir-uk.org/materials/europe-pmc-programmatically Europe PMC is an open repository, providing access to worldwide biomedical literature, including articles, books, patents, and clinical guidelines. More than 32 million abstracts (27 million from PubMed) and 4 million full-text articles can be freely accessed through Europe PMC in a single search. The mission of Europe PMC is to build open access, full-text scientific literature resources and deliver world-class literature services. This webinar will introduce the Europe PMC Articles RESTful API and show you how to access publications and related information, such as citations, data links, or text-mined terms, programmatically. Francesco Talo Yogmatee Rochun Literature search, Programmatic Access, Europe PMC, REST API, Biomedical Literature