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SPHN/BioMedIT Data Privacy and IT Security Training

No description provided.

SPHN/BioMedIT Data Privacy and IT Security Training http://tess.elixir-uk.org/materials/sphn-biomedit-data-privacy-and-it-security-training No description provided.
Cellosaurus : A resource on cell lines

No description provided.

Cellosaurus : A resource on cell lines http://tess.elixir-uk.org/materials/cellosaurus-a-resource-on-cell-lines No description provided.
Schema.org, what and why?

In this tutorial you will get an idea on what Schema.org is and how it is useful

Keywords: schemaorg, markup, structured data, schemaorg, markup, structured data

Schema.org, what and why? http://tess.elixir-uk.org/materials/schema-org-what-and-why In this tutorial you will get an idea on what Schema.org is and how it is useful schemaorg, markup, structured data, schemaorg, markup, structured data
Bioschemas, what and why?

In this tutorial you will learn what Bioschemas is, what the added value to schema.org.is and what the main elements in Bioschemas are

Keywords: schemaorg, markup, structured data, bioschemas, schemaorg, markup, structured data, bioschemas

Bioschemas, what and why? http://tess.elixir-uk.org/materials/bioschemas-what-and-why In this tutorial you will learn what Bioschemas is, what the added value to schema.org.is and what the main elements in Bioschemas are schemaorg, markup, structured data, bioschemas, schemaorg, markup, structured data, bioschemas
Schema.org markup examples

With these examples you will get a better understanding of benefits brought by structure data, i.e., schema.org markup

Keywords: schemaorg, markup, structured data, example, schemaorg, markup, structured data, example

Schema.org markup examples http://tess.elixir-uk.org/materials/schema-org-markup-examples With these examples you will get a better understanding of benefits brought by structure data, i.e., schema.org markup schemaorg, markup, structured data, example, schemaorg, markup, structured data, example
How to select the right profile for your resource

In this how-to, we will guide you through the necessary steps for you to select a Bioschemas profile that will be later used to add mark up to your own resources

Keywords: schemaorg, markup, structured data, bioschemas profile, schemaorg, markup, structured data, bioschemas profile

How to select the right profile for your resource http://tess.elixir-uk.org/materials/how-to-select-the-right-profile-for-your-resource In this how-to, we will guide you through the necessary steps for you to select a Bioschemas profile that will be later used to add mark up to your own resources schemaorg, markup, structured data, bioschemas profile, schemaorg, markup, structured data, bioschemas profile
How to update a profile

In this how-to, we will guide you through the necessary steps for you to update a profile, i.e.,create and publish a new draft profile, you need some knowledge on spreadsheets, GitHub, git and Jekyll.

Keywords: schema.org, markup, structured data, bioschemas profile, schema.org, markup, structured data, bioschemas profile

How to update a profile http://tess.elixir-uk.org/materials/how-to-update-a-profile In this how-to, we will guide you through the necessary steps for you to update a profile, i.e.,create and publish a new draft profile, you need some knowledge on spreadsheets, GitHub, git and Jekyll. schema.org, markup, structured data, bioschemas profile, schema.org, markup, structured data, bioschemas profile
How to create a new Bioschemas profile

In this how-to, we will guide you through the necessary steps to create a new Bioschemas profile.

Keywords: schema.org, markup, structured data, bioschemas profile, schema.org, markup, structured data, bioschemas profile

How to create a new Bioschemas profile http://tess.elixir-uk.org/materials/how-to-create-a-new-bioschemas-profile In this how-to, we will guide you through the necessary steps to create a new Bioschemas profile. schema.org, markup, structured data, bioschemas profile, schema.org, markup, structured data, bioschemas profile
How to check your Bioschemas deployment

This guide will show you how to check your deployed markup, both locally and what is retrieved by external services.

Keywords: schemaorg, JSON-LD, bioschemas

How to check your Bioschemas deployment http://tess.elixir-uk.org/materials/how-to-check-your-bioschemas-deployment This guide will show you how to check your deployed markup, both locally and what is retrieved by external services. schemaorg, JSON-LD, bioschemas
How to mark up your own resource with Bioschemas

In this how-to, we will guide you through the necessary steps in order to get a JSON-LD markup describing your own resource using a Bioschemas profile

Keywords: schemaorg, markup, structured data, bioschemas, schemaorg, markup, structured data, bioschemas

How to mark up your own resource with Bioschemas http://tess.elixir-uk.org/materials/how-to-mark-up-your-own-resource-with-bioschemas In this how-to, we will guide you through the necessary steps in order to get a JSON-LD markup describing your own resource using a Bioschemas profile schemaorg, markup, structured data, bioschemas, schemaorg, markup, structured data, bioschemas
Adding Schema.org to a GitHub Pages site

This guide will show you how to do add Schema.org markup to a GitHub Pages site.

Keywords: schemaorg, TeSS, GitHub pages, schemaorg, TeSS, GitHub pages

Adding Schema.org to a GitHub Pages site http://tess.elixir-uk.org/materials/adding-schema-org-to-a-github-pages-site-deb50140-9274-4c87-9eda-5361cb287e71 This guide will show you how to do add Schema.org markup to a GitHub Pages site. schemaorg, TeSS, GitHub pages, schemaorg, TeSS, GitHub pages
SARS-CoV-2 : Studying a new virus

In December 2019, a new type of virus of the family Coronaviridae called SARS-CoV-2 (formerly 2019-nCoV) was identified as the cause of an outbreak. In this e-learning course, you will learn to find, use or interpret information about a new virus. Knowledge of the basic molecular biology of...

SARS-CoV-2 : Studying a new virus http://tess.elixir-uk.org/materials/sars-cov-2-studying-a-new-virus In December 2019, a new type of virus of the family Coronaviridae called SARS-CoV-2 (formerly 2019-nCoV) was identified as the cause of an outbreak. In this e-learning course, you will learn to find, use or interpret information about a new virus. Knowledge of the basic molecular biology of viruses is presumed.
Explore and visualize your data with Python

In this e-learning course, you will reproduce a typical analysis pipeline using Python, an open-source and general-purpose scripting language which runs on all major operating systems. Basic knowledge of Python programming is required.

Explore and visualize your data with Python http://tess.elixir-uk.org/materials/explore-and-visualize-your-data-with-python In this e-learning course, you will reproduce a typical analysis pipeline using Python, an open-source and general-purpose scripting language which runs on all major operating systems. Basic knowledge of Python programming is required.
Cybersecurity Quiz for SIB employees only (internal use)

No description provided.

Cybersecurity Quiz for SIB employees only (internal use) http://tess.elixir-uk.org/materials/cybersecurity-quiz-for-sib-employees-only-internal-use No description provided.
neXtProt : Exploring human proteins

In this 1-hour e-learning course, you will learn what type of information on human proteins is found in neXtProt, where it comes from and how it is organized in topic-specific entry views. Basic knowledge of biology and proteins is required.

neXtProt : Exploring human proteins http://tess.elixir-uk.org/materials/nextprot In this 1-hour e-learning course, you will learn what type of information on human proteins is found in neXtProt, where it comes from and how it is organized in topic-specific entry views. Basic knowledge of biology and proteins is required.
Information Security Awareness (BioMedIT)

No description provided.

Information Security Awareness (BioMedIT) http://tess.elixir-uk.org/materials/demo-cyber-security-awareness-biomedit No description provided.
ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard

This short presentation was presented as part of the Friday Coffee presentation series organized by the ELIXIR CZ infrastructure and offered students a basic insight into data management and data management plans, which are important (not only) for the success of scientific projects, but...

Scientific topics: Data management

Keywords: data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar

ELIXIR CZ Friday Coffee #5: Data Management with Data Stewardship Wizard http://tess.elixir-uk.org/materials/elixir-cz-friday-coffee-5-data-management-with-data-stewardship-wizard This short presentation was presented as part of the Friday Coffee presentation series organized by the ELIXIR CZ infrastructure and offered students a basic insight into data management and data management plans, which are important (not only) for the success of scientific projects, but increasingly for grant applications as well. The presentation also introduced students to the possibility of creating these plans using the [Data Stewardship Wizard](https://ds-wizard.org), a tool that creates the data management plan by filling out a simple, synoptic questionnaire. It offers a simple and very effective solution without the need for deep knowledge of data stewardship or data management. Video available [here](https://www.youtube.com/watch?v=2YGrVGa9JYY). Data management data management plan, data stewardship, FAIR, data management, software tools Researchers data managers data stewards
Course design: Considerations for trainers – a Professional Guide

This Professional Guide in the Resources for Training Trainers series introduces a structured approach to course design, highlighting the importance of articulating learning outcomes commensurate with the cognitive complexity of the target learning, prior to devising learning experiences and...

Keywords: Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material

Course design: Considerations for trainers – a Professional Guide http://tess.elixir-uk.org/materials/course-design-considerations-for-trainers-a-professional-guide This Professional Guide in the Resources for Training Trainers series introduces a structured approach to course design, highlighting the importance of articulating learning outcomes commensurate with the cognitive complexity of the target learning, prior to devising learning experiences and course content. The specific focus here is on face-to-face activities, but the guidance is also relevant for those designing online courses. Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material Training instructors Trainers Training Designers Anyone who wants to become a good trainer or teacher teachers
Identifier mapping with Cytoscape

This vignette will show you how to map or translate identifiers from one database (e.g., Ensembl) to another (e.g, Entrez Gene). This is a common requirement for data analysis. In the context of Cytoscape, for example, identifier mapping is needed when you want to import data to overlay on a...

Keywords: ELIXIR RIR, BridgeDb

Identifier mapping with Cytoscape http://tess.elixir-uk.org/materials/identifier-mapping-with-cytoscape This vignette will show you how to map or translate identifiers from one database (e.g., Ensembl) to another (e.g, Entrez Gene). This is a common requirement for data analysis. In the context of Cytoscape, for example, identifier mapping is needed when you want to import data to overlay on a network but you don’t have matching keys. ELIXIR RIR, BridgeDb
BridgeDb-Matlab Usage Instructions

Instructions on how to install and use the BridgeDb functionality in Matlab.

Keywords: ELIXIR RIR, BridgeDb

BridgeDb-Matlab Usage Instructions http://tess.elixir-uk.org/materials/bridgedb-matlab-usage-instructions Instructions on how to install and use the BridgeDb functionality in Matlab. ELIXIR RIR, BridgeDb
Research Data Management and Sharing MOOC

This course will provide learners with an introduction to research data management and sharing. After completing this course, learners will understand the diversity of data and their management needs across the research data lifecycle, be able to identify the components of good data management...

Scientific topics: Data management

Keywords: Data Life Cycle, Data managment plan

Resource type: online modules

Research Data Management and Sharing MOOC http://tess.elixir-uk.org/materials/research-data-management-and-sharing-mooc This course will provide learners with an introduction to research data management and sharing. After completing this course, learners will understand the diversity of data and their management needs across the research data lifecycle, be able to identify the components of good data management plans, and be familiar with best practices for working with data including the organization, documentation, and storage and security of data. Learners will also understand the impetus and importance of archiving and sharing data as well as how to assess the trustworthiness of repositories. Data management Data Life Cycle, Data managment plan Life Science Researchers Researchers
Mantra Research Data Management Training

MANTRA is a free, online non-assessed course with guidelines to help you understand and reflect on how to manage the digital data you collect throughout your research. It has been crafted for the use of post-graduate students, early career researchers, and also information professionals. It is...

Mantra Research Data Management Training http://tess.elixir-uk.org/materials/mantra-research-data-management-training MANTRA is a free, online non-assessed course with guidelines to help you understand and reflect on how to manage the digital data you collect throughout your research. It has been crafted for the use of post-graduate students, early career researchers, and also information professionals. It is freely available on the web for anyone to explore on their own. Through a series of interactive online units you will learn about terminology, key concepts, and best practice in research data management.
WEBINAR: Making sense of phosphoproteomics data with Phosphomatics

This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Making sense of phosphoproteomics data with Phosphomatics’. This webinar took place on 2 June 2021.

Scientific topics: Protein modifications, Proteomics

Keywords: Phosphoproteomics

WEBINAR: Making sense of phosphoproteomics data with Phosphomatics http://tess.elixir-uk.org/materials/webinar-making-sense-of-phosphoproteomics-data-with-phosphomatics This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Making sense of phosphoproteomics data with Phosphomatics’. This webinar took place on 2 June 2021. Protein modifications Proteomics Phosphoproteomics
WEBINAR: Getting started with deep learning

This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Getting started with deep learning’. This webinar took place on 21 July 2021.

Scientific topics: Machine learning

Keywords: Deep learning

WEBINAR: Getting started with deep learning http://tess.elixir-uk.org/materials/webinar-getting-started-with-deep-learning This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Getting started with deep learning’. This webinar took place on 21 July 2021. Machine learning Deep learning
WEBINAR: Detection of and phasing of hybrid accessions in a target capture dataset

This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Detection of and phasing of hybrid accessions in a target capture dataset’. This webinar took place on 10 June 2021.

Scientific topics: Phylogeny, Phylogenetics

WEBINAR: Detection of and phasing of hybrid accessions in a target capture dataset http://tess.elixir-uk.org/materials/webinar-detection-of-and-phasing-of-hybrid-accessions-in-a-target-capture-dataset This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Detection of and phasing of hybrid accessions in a target capture dataset’. This webinar took place on 10 June 2021. Phylogeny Phylogenetics
WEBINAR: Conflict in multi-gene datasets: why it happens and what to do about it - deep coalescence, paralogy and reticulation

This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Conflict in multi-gene datasets: why it happens and what to do about it - deep coalescence, paralogy and reticulation’. This webinar took place on 20 May 2021.

Scientific topics: Phylogenetics

WEBINAR: Conflict in multi-gene datasets: why it happens and what to do about it - deep coalescence, paralogy and reticulation http://tess.elixir-uk.org/materials/webinar-conflict-in-multi-gene-datasets-why-it-happens-and-what-to-do-about-it-deep-coalescence-paralogy-and-reticulation This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Conflict in multi-gene datasets: why it happens and what to do about it - deep coalescence, paralogy and reticulation’. This webinar took place on 20 May 2021. Phylogenetics
WORKSHOP: Variant calling in humans, animals and plants with Galaxy

This Zenodo record includes training materials associated with the Australian BioCommons workshop ‘Variant calling in humans, animals and plants with Galaxy’. This workshop took place on 25 May 2021.

Scientific topics: Genetic variation

Keywords: Variant calling

WORKSHOP: Variant calling in humans, animals and plants with Galaxy http://tess.elixir-uk.org/materials/workshop-variant-calling-in-humans-animals-and-plants-with-galaxy This Zenodo record includes training materials associated with the Australian BioCommons workshop ‘Variant calling in humans, animals and plants with Galaxy’. This workshop took place on 25 May 2021. Genetic variation Variant calling
WEBINAR: Getting started with command line bioinformatics

This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.

Scientific topics: Computational biology

Keywords: Command line

WEBINAR: Getting started with command line bioinformatics http://tess.elixir-uk.org/materials/webinar-getting-started-with-command-line-bioinformatics This Zenodo record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021. Carolyn Hogg Computational biology Command line
Multi-omics data visualization with PathVisio

With this tutorial you can follow a step-by-step guide for visualizing multi-omics data with the pathway drawing software PathVisio

Keywords: biological pathways, Pathways, Pathway analysis

Resource type: Tutorial

Multi-omics data visualization with PathVisio http://tess.elixir-uk.org/materials/multi-omics-data-visualization-with-pathvisio With this tutorial you can follow a step-by-step guide for visualizing multi-omics data with the pathway drawing software PathVisio biological pathways, Pathways, Pathway analysis
Access Bioinformatics Databases with Biopython

In this 1-hour long project-based course, you will learn how to access, parse, and visualize data from various bioinformatics sequence and structural online databases such as ENTREZ, PDB, KEGG and NCBI using Biopython. You will also interact with various bioinformatics file formats such as FASTA,...

Keywords: data-science, life-sciences, data-analysis, health-informatics

Access Bioinformatics Databases with Biopython http://tess.elixir-uk.org/materials/access-bioinformatics-databases-with-biopython In this 1-hour long project-based course, you will learn how to access, parse, and visualize data from various bioinformatics sequence and structural online databases such as ENTREZ, PDB, KEGG and NCBI using Biopython. You will also interact with various bioinformatics file formats such as FASTA, PDB, GENBANK and XML along with various parsers to read and modify these files using Biopython. Note: This course works best for learners who are based in the North America region. We’re currently working on providing the same experience in other regions. data-science, life-sciences, data-analysis, health-informatics