Plant Phenotyping Data managment Webinar (MIAPPE)
The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking...
Scientific topics: Data submission, annotation, and curation, Data quality management, Phenomics, Plant biology
Operations: Standardisation and normalisation
Resource type: Video, Slides
Plant Phenotyping Data managment Webinar (MIAPPE)
https://youtu.be/4FOQPAWl6_M
http://tess.elixir-uk.org/materials/plant-phenotyping-data-managment-webinar-miappe
The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking between phenotype and genotype datasets, relevant section of MIAPPE are beginning to be used for genotyping standards. This Webinar will give an overview of the current practices and methods for plant phenotyping data standardization, and how to deal with the variability and heterogeneity inherent to research and breeding data sets. Data management approaches at some of the major research organizations will be given as examples.
The recording is available [here](https://youtu.be/4FOQPAWl6_M) and the slides are [here](https://drive.google.com/file/d/1FORlCX662T9dxiG4uzQwVXDXnq-sP0FP/view?usp=sharing)
Cyril Pommier
Cyril Pommier
Anne-Françoise Adam-Blondon
Célia Michotey
Data submission, annotation, and curation
Data quality management
Phenomics
Plant biology
Researchers
Biologists, Genomicists, Computer Scientists
Biologists
software developers, bioinformaticians
CPANG19 - Computational PANGenomics (2019)
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
Keywords: Genomics
Resource type: Documentation, Exercise, Handout, Scripts
CPANG19 - Computational PANGenomics (2019)
https://gtpb.github.io/CPANG19/
http://tess.elixir-uk.org/materials/cpang19-computational-pangenomics-2019
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
The Gulbenkian Training Programme in Bioinformatics
Erik Garrison
Mikko Rautiainen
Genomics
Academia/ Research Institution
Industry
Non-Profit Organisation
Healthcare
CPANG18 - Computational PANGenomics (2018)
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
Keywords: Genomics
Resource type: Documentation, Exercise, Handout, Scripts
CPANG18 - Computational PANGenomics (2018)
https://gtpb.github.io/CPANG18/
http://tess.elixir-uk.org/materials/cpang18-computational-pangenomics-2018
Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.
The Gulbenkian Training Programme in Bioinformatics
Erik Garrison
Mikko Rautiainen
Jordan Eizenga
Genomics
Academia/ Research Institution
Industry
Non-Profit Organisation
