Introduction to Workflows with Common Workflow Language
Introduction to workflow thinking for novices, using the Common Workflow Language
Scientific topics: Workflows
Operations: RNA-Seq analysis
Keywords: cwl, commonwl, sciworkflows, workflows
Resource type: Carpentries style curriculum
Introduction to Workflows with Common Workflow Language
https://carpentries-incubator.github.io/cwl-novice-tutorial/
http://tess.elixir-uk.org/materials/introduction-to-workflows-with-common-workflow-language
Introduction to workflow thinking for novices, using the Common Workflow Language
Michael R. Crusoe
Gerard Capes
Douglas Lowe
Anne Luesink
Stian Soiland-Reyes
Toby Hodges
Sehrish Kanwal
Pedro L Fernandes
Workflows
cwl, commonwl, sciworkflows, workflows
esearchers and research software engineers who would like to begin automating their analyses in workflows.
BioExcel Building Blocks (BioBB) Training Material
BioExcel Building Blocks (BioBB) is a software library for interoperable biomolecular simulation workflows, built within the BioExcel CoE project, and developed following best practices on software development aligned with ELIXIR.
Keywords: molecular dynamics, Docking, Modeling, life sciences
Resource type: Jupyter notebook
BioExcel Building Blocks (BioBB) Training Material
https://mmb.irbbarcelona.org/biobb/documentation/online-info
http://tess.elixir-uk.org/materials/bioexcel-building-blocks-biobb-training-material
BioExcel Building Blocks (BioBB) is a software library for interoperable biomolecular simulation workflows, built within the BioExcel CoE project, and developed following best practices on software development aligned with ELIXIR.
Adam Hospital
Genís Bayarri
Pau Andrio
Lucía Fabio
Josep Lluís Gelpí
Stian Soiland-Reyes
molecular dynamics, Docking, Modeling, life sciences
PhD students
computational scientists
Computational biologists
BioLayout Express 3D
Derek Wright discusses the BioLayout Express visualisation tool at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Scientific topics: Pathway or network
Keywords: Cells and Organisms, Genome, Pathway
Resource type: Video
BioLayout Express 3D
https://bivi.co/presentation/biolayout-express-3d
http://tess.elixir-uk.org/materials/biolayout-express-3d
Derek Wright discusses the BioLayout Express visualisation tool at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Derek Wright
Pathway or network
Cells and Organisms, Genome, Pathway
2017-02-02
Web-based Tools for Integrative Analysis of Pancreatic Cancer Data
Poster presentation at 3rd BiVi in April 2017.Presenitng a suite of web applications, developed for the PRECISION-Parc initiative, to provide integrative analyses of genomic and transcription data from patient primary samples, cell lines and xenografts, as well as clinical data on patient...
Scientific topics: Pathway or network
Keywords: Genome, Pathway
Resource type: Poster
Web-based Tools for Integrative Analysis of Pancreatic Cancer Data
https://bivi.co/presentation/web-based-tools-integrative-analysis-pancreatic-cancer-data
http://tess.elixir-uk.org/materials/web-based-tools-for-integrative-analysis-of-pancreatic-cancer-data
Poster presentation at 3rd BiVi in April 2017.Presenitng a suite of web applications, developed for the PRECISION-Parc initiative, to provide integrative analyses of genomic and transcription data from patient primary samples, cell lines and xenografts, as well as clinical data on patient survival.
Created at: 3rd BiVi Annual Meeting (2017).
Derek Wright
Pathway or network
Genome, Pathway
2017-05-30
