Register training material
3 materials found

Contributors: Derek Wright  or Eija Korpelainen @eija, eko... 


Single cell RNA-seq data analysis with R

This international hands-on course covers several aspects of single cell RNA-seq data analysis, ranging from clustering and differential gene expression analysis to trajectories, cell type identification and spatial transcriptomics. The course is kindly sponsored by the ELIXIR EXCELERATE...

Scientific topics: RNA-Seq

Keywords: RNA-Seq, Single Cell technologies, scRNA-seq

Resource type: course materials

Single cell RNA-seq data analysis with R http://tess.elixir-uk.org/materials/single-cell-rna-seq-data-analysis-with-r-26ec3ec0-8f43-47db-9788-7f8f63eb447b This international hands-on course covers several aspects of single cell RNA-seq data analysis, ranging from clustering and differential gene expression analysis to trajectories, cell type identification and spatial transcriptomics. The course is kindly sponsored by the ELIXIR EXCELERATE project. Note: You can find all the course material including the R code and data files in the course [GitHub](https://github.com/NBISweden/excelerate-scRNAseq) repository, and the lecture videos are available as a [YouTube playlist](https://www.youtube.com/playlist?list=PLjiXAZO27elC_xnk7gVNM85I2IQl5BEJN). Eija Korpelainen @eija, ekorpelainen@gmail.com RNA-Seq RNA-Seq, Single Cell technologies, scRNA-seq bioinformaticians Biologists
BioLayout Express 3D

Derek Wright discusses the BioLayout Express visualisation tool at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting.

Scientific topics: Pathway or network

Keywords: Cells and Organisms, Genome, Pathway

Resource type: Video

BioLayout Express 3D http://tess.elixir-uk.org/materials/biolayout-express-3d Derek Wright discusses the BioLayout Express visualisation tool at 1st BiVi in 2014. Created at: 1st BiVi Annual Meeting. Derek Wright Pathway or network Cells and Organisms, Genome, Pathway 2017-02-02
Web-based Tools for Integrative Analysis of Pancreatic Cancer Data

Poster presentation at 3rd BiVi in April 2017.Presenitng a suite of web applications, developed for the PRECISION-Parc initiative, to provide integrative analyses of genomic and transcription data from patient primary samples, cell lines and xenografts, as well as clinical data on patient...

Scientific topics: Pathway or network

Keywords: Genome, Pathway

Resource type: Poster

Web-based Tools for Integrative Analysis of Pancreatic Cancer Data http://tess.elixir-uk.org/materials/web-based-tools-for-integrative-analysis-of-pancreatic-cancer-data Poster presentation at 3rd BiVi in April 2017.Presenitng a suite of web applications, developed for the PRECISION-Parc initiative, to provide integrative analyses of genomic and transcription data from patient primary samples, cell lines and xenografts, as well as clinical data on patient survival. Created at: 3rd BiVi Annual Meeting (2017). Derek Wright Pathway or network Genome, Pathway 2017-05-30