Introductory image processing on biological images using python.
A jupyter notebook python practical designed to give students a introduction to opening and processing image files derived from biological samples.
Resource type: Jupyter notebook, PDF
Introductory image processing on biological images using python.
https://github.com/dwaithe/model-training/
http://tess.elixir-uk.org/materials/introductory-image-processing-on-biological-images-using-python
A jupyter notebook python practical designed to give students a introduction to opening and processing image files derived from biological samples.
Dominic Waithe
Anatole Chessel
Volker Baecker
Bioimage Analysts
Image Analysts
Computer Vision scientists
bioinformaticians
computational scientists
Biophysicists
Biologists
Microscopists
Python for Biologists
PhD students
Zegami: A tool for image data exploration
Stephen Taylor discusses the Zegami visualisation tool at 1st BiVi in 2014. An associated poster is also available.
Created at: 1st BiVi Annual Meeting.
Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome
Resource type: Poster, Video
Zegami: A tool for image data exploration
https://bivi.co/presentation/zegami-tool-image-data-exploration
http://tess.elixir-uk.org/materials/zegami-a-tool-for-image-data-exploration
Stephen Taylor discusses the Zegami visualisation tool at 1st BiVi in 2014. An associated poster is also available.
Created at: 1st BiVi Annual Meeting.
Stephen Taylor
Anatomy Physiology and Atlases, Cells and Organisms, Genome
2017-02-02
Zegami: Image visualisation, annotation and searching
Stephen Taylor describes and demonstrates Zegami at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome
Resource type: Slideshow
Zegami: Image visualisation, annotation and searching
https://bivi.co/presentation/zegami-image-visualisation-annotation-and-searching
http://tess.elixir-uk.org/materials/zegami-image-visualisation-annotation-and-searching
Stephen Taylor describes and demonstrates Zegami at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Stephen Taylor
Anatomy Physiology and Atlases, Cells and Organisms, Genome
2017-02-03
Zegami: Digital Data Integration, Visualisation and Management
Stephen Taylor discusses Zegami with examples and latest developments at 3rd BiVi in April 2017.Zegami has the potential to do for images what the spreadsheet did for number calculations. It provides a way of manipulating images and derived values (from the images themselves or annotated...
Keywords: Cells and Organisms, Databases
Resource type: Video
Zegami: Digital Data Integration, Visualisation and Management
https://bivi.co/presentation/zegami-digital-data-integration-visualisation-and-management
http://tess.elixir-uk.org/materials/zegami-digital-data-integration-visualisation-and-management
Stephen Taylor discusses Zegami with examples and latest developments at 3rd BiVi in April 2017.Zegami has the potential to do for images what the spreadsheet did for number calculations. It provides a way of manipulating images and derived values (from the images themselves or annotated metadata) on a massive scale allowing querying and organisation of large image based collections. The talk will show various examples of its usage in biology and beyond, and will look at new features such as annotation to build training sets for machine learning.
Created at: 3rd BiVi Annual Meeting (2017).
Stephen Taylor
Cells and Organisms, Databases
2017-05-12
