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Contributors: Anatole Chessel  or David Castillo 


3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)

3C-based methods, such as Hi-C, produce a huge amount of raw data as pairs of DNA reads that are spatially close in the cell nucleus. Overall, these interaction matrices have been used to study how the genome folds within the nucleus, that is one of the most fascinating problems in modern...

Keywords: Hi-C

Resource type: Documentation, Exercise, Handout, Scripts

Introductory image processing on biological images using python.

This is an image processing practical for students with an interest in analysing biologically derived images. It is written in the language python and utilises jupyter notebook for annotation and visualisation of the code. The practical is beginner level, although some knowledge of python is...

Resource type: Jupyter notebook, PDF