Regular expressions
This course introduces regular expressions and how to search for text patterns
in a number of programming languages (UNIX command line, R, Python etc.).
It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
Regular expressions
http://biocomp.vbcf.ac.at/training/compskills/regexp.html
http://tess.elixir-uk.org/materials/regular-expressions
This course introduces regular expressions and how to search for text patterns
in a number of programming languages (UNIX command line, R, Python etc.).
It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
András Aszódi
AWK and BASH scripting
This course introduces scripting with AWK and BASH.
It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
AWK and BASH scripting
http://biocomp.vbcf.ac.at/training/compskills/scripting.html
http://tess.elixir-uk.org/materials/awk-and-bash-scripting
This course introduces scripting with AWK and BASH.
It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
András Aszódi
ANOVA with R
The aim of this short course is to explain why we have to analyse variances
if we want to compare group means using ANOVA techniques. This lecture may be included
in the Linear regression with R course.
Please note that we cannot go into the specific data analysis problems of your particular...
ANOVA with R
http://biocomp.vbcf.ac.at/training/biostat/ranova.html
http://tess.elixir-uk.org/materials/anova-with-r
The aim of this short course is to explain why we have to analyse variances
if we want to compare group means using ANOVA techniques. This lecture may be included
in the Linear regression with R course.
Please note that we cannot go into the specific data analysis problems of your particular project.
András Aszódi
Advanced plotting with ggplot in R
The aim of this course is to teach you how to create informative scientific plots
using the ggplot package in R.
Advanced plotting with ggplot in R
http://biocomp.vbcf.ac.at/training/reporting/rggplot.html
http://tess.elixir-uk.org/materials/advanced-plotting-with-ggplot-in-r
The aim of this course is to teach you how to create informative scientific plots
using the ggplot package in R.
András Aszódi
Life Science Figure Design
The purpose of this course is to familiarise participants with the principles of graphic design.
They will learn how to faithfully represent data in figures and improve their own data presentation style.
Life Science Figure Design
http://biocomp.vbcf.ac.at/training/reporting/figdesign.html
http://tess.elixir-uk.org/materials/life-science-figure-design
The purpose of this course is to familiarise participants with the principles of graphic design.
They will learn how to faithfully represent data in figures and improve their own data presentation style.
Helena Jambor
2017-10-09
Statistics with R
The aim of this course is to teach you how to perform basic statistical analysis using R.
First we review the foundations (sampling theory, discrete and continuous distributions),
then we focus on classical hypothesis testing.
This course will improve your generic statistics knowledge.
We...
Statistics with R
http://biocomp.vbcf.ac.at/training/biostat/rstat.html
http://tess.elixir-uk.org/materials/statistics-with-r-70bbe42a-0729-4f11-b2e8-7cf281e74533
The aim of this course is to teach you how to perform basic statistical analysis using R.
First we review the foundations (sampling theory, discrete and continuous distributions),
then we focus on classical hypothesis testing.
This course will improve your generic statistics knowledge.
We cannot go into the specific data analysis problems of your particular project.
András Aszódi
2017-10-09
Python programming primer
The purpose of this training is to teach general programming concepts
using Python as an instruction tool.
Python programming primer
http://biocomp.vbcf.ac.at/training/compskills/python.html
http://tess.elixir-uk.org/materials/python-programming-primer-dd4b3b9e-a5cb-4a94-88bb-24eeeff92f27
The purpose of this training is to teach general programming concepts
using Python as an instruction tool.
András Aszódi
2017-10-09
R as a programming language
This course is aimed at colleagues who would like to learn
how to use the statistical programming language "R".
We will learn about the data structures and functions in R, and how to write R scripts.
R as a programming language
http://biocomp.vbcf.ac.at/training/compskills/rlang.html
http://tess.elixir-uk.org/materials/r-as-a-programming-language-401a3243-45a4-40cc-9b88-265cc4ce80cc
This course is aimed at colleagues who would like to learn
how to use the statistical programming language "R".
We will learn about the data structures and functions in R, and how to write R scripts.
András Aszódi
2017-10-09
UNIX command line
This course introduces the UNIX command line on a Linux or Mac.
It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
UNIX command line
http://biocomp.vbcf.ac.at/training/compskills/unix.html
http://tess.elixir-uk.org/materials/unix-command-line-and-scripting-d6803e90-5f26-40e2-98cd-6128b0d7485d
This course introduces the UNIX command line on a Linux or Mac.
It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
András Aszódi
2017-10-09
Scientific writing
The title says it all: we teach the participants how to write good scientific texts.
Scientific writing
http://biocomp.vbcf.ac.at/training/reporting/sciwriting.html
http://tess.elixir-uk.org/materials/scientific-writing
The title says it all: we teach the participants how to write good scientific texts.
András Aszódi
2017-10-09
Scientific data visualisation
The purpose of this course is to familiarise participants with the principles of graphic design.
They will learn how to faithfully represent data in figures and improve their own data presentation style.
Scientific data visualisation
http://biocomp.vbcf.ac.at/training/reporting/dataviz.html
http://tess.elixir-uk.org/materials/scientific-data-visualisation-3174df43-1ffe-479d-9c9b-5810b8a4e37a
The purpose of this course is to familiarise participants with the principles of graphic design.
They will learn how to faithfully represent data in figures and improve their own data presentation style.
Helena Jambor
2017-03-27
Linear regression with R
The aim of this course is to teach you how to fit linear models to your data using R.
We focus on linear regression and generalised linear models (GLMs) in order to improve your generic statistics knowledge.
Please note that we cannot go into the specific data analysis problems of your...
Linear regression with R
http://biocomp.vbcf.ac.at/training/biostat/rlinmod.html
http://tess.elixir-uk.org/materials/linear-models-with-r
The aim of this course is to teach you how to fit linear models to your data using R.
We focus on linear regression and generalised linear models (GLMs) in order to improve your generic statistics knowledge.
Please note that we cannot go into the specific data analysis problems of your particular project.
András Aszódi
2017-10-09
Grant writing workshop
The title says it all: we teach the participants how to write good grant applications.
If you are a PhD student in your final year, a postdoc or a group leader, then you
will profit a lot from this practical workshop.
Grant writing workshop
http://biocomp.vbcf.ac.at/training/generic/grantwriting.html
http://tess.elixir-uk.org/materials/grant-writing-workshop
The title says it all: we teach the participants how to write good grant applications.
If you are a PhD student in your final year, a postdoc or a group leader, then you
will profit a lot from this practical workshop.
András Aszódi
2016-05-12
Scientific data visualisation
The purpose of this course is to familiarise participants with the principles of graphic design.
They will learn how to faithfully represent data in figures and improve their own data presentation style.
Scientific data visualisation
http://biocomp.vbcf.ac.at/training/generic/dataviz.html
http://tess.elixir-uk.org/materials/scientific-data-visualisation
The purpose of this course is to familiarise participants with the principles of graphic design.
They will learn how to faithfully represent data in figures and improve their own data presentation style.
Helena Jambor
2016-05-12
RNA-Seq data analysis
The aim of the course is to familiarise experimental biologists with how bioinformaticians
analyse RNA-Seq data. The statistical background will be explained in easy-to-understand terms
with practical examples.
This course is recommended to colleagues who are planning to do RNA-Seq...
RNA-Seq data analysis
http://biocomp.vbcf.ac.at/training/bioinf/rnaseq.html
http://tess.elixir-uk.org/materials/rna-seq-data-analysis
The aim of the course is to familiarise experimental biologists with how bioinformaticians
analyse RNA-Seq data. The statistical background will be explained in easy-to-understand terms
with practical examples.
This course is recommended to colleagues who are planning to do RNA-Seq experiments
and want to understand better what happens to their raw data in the bioinformatician's hands.
Elin Axelsson
2017-10-09
Advanced regression methods
The aim of this course is to help computational biologists with complex data analysis problems.
After discussing the theoretical foundations, the course will provide practical advice
on how to use the presented methodogies with R.
Advanced regression methods
http://biocomp.vbcf.ac.at/training/biostat/advregr.html
http://tess.elixir-uk.org/materials/advanced-regression-methods
The aim of this course is to help computational biologists with complex data analysis problems.
After discussing the theoretical foundations, the course will provide practical advice
on how to use the presented methodogies with R.
Bettina Grün
2017-10-09
Machine learning methods
The aim of this course is to help computational biologists with complex data analysis problems.
After discussing the theoretical foundations, the course will provide practical advice
on how to use selected machine learning methodogies with R.
Machine learning methods
http://biocomp.vbcf.ac.at/training/biostat/machlearn.html
http://tess.elixir-uk.org/materials/machine-learning-methods
The aim of this course is to help computational biologists with complex data analysis problems.
After discussing the theoretical foundations, the course will provide practical advice
on how to use selected machine learning methodogies with R.
Bettina Grün
2017-10-09
IMP/IMBA HPC cluster introduction
This course provides an introduction to the IMP/IMBA high-performance
computing cluster.
IMP/IMBA HPC cluster introduction
http://biocomp.vbcf.ac.at/training/compskills/impclu.html
http://tess.elixir-uk.org/materials/imp-imba-hpc-cluster-introduction
This course provides an introduction to the IMP/IMBA high-performance
computing cluster.
András Aszódi
2017-10-09
GMI "Mendel" cluster introduction
This course provides an introduction to the GMI high-performance
computing cluster "Mendel".
GMI "Mendel" cluster introduction
http://biocomp.vbcf.ac.at/training/compskills/mendel.html
http://tess.elixir-uk.org/materials/gmi-mendel-cluster-introduction
This course provides an introduction to the GMI high-performance
computing cluster "Mendel".
András Aszódi
2017-10-09
