Material for the course RNA-seq data analysis with Chipster
This material covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis.
Scientific topics: RNA-Seq
Keywords: RNA-Seq, FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
Material for the course RNA-seq data analysis with Chipster
https://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/RNA-Seq/Eija_Korpelainen/RNAseq_data_analysis_with_Chipster_2015.md
http://tess.elixir-uk.org/materials/material-for-the-course-rna-seq-data-analysis-with-chipster
This material covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis.
Eija Korpelainen @eija, ekorpelainen@gmail.com
RNA-Seq
RNA-Seq, FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
Exercises for the course RNA-seq data analysis with Chipster
This practical covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis, using the free Chipster software. Material updated in Dec 2015.
Keywords: FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
Exercises for the course RNA-seq data analysis with Chipster
https://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/RNA-Seq/Eija_Korpelainen/RNAseq_data_analysis_with_Chipster_2015/practical_RNAseq_data_analysis_with_Chipster_2015.md
http://tess.elixir-uk.org/materials/exercises-for-the-course-rna-seq-data-analysis-with-chipster
This practical covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis, using the free Chipster software. Material updated in Dec 2015.
Eija Korpelainen @eija, ekorpelainen@gmail.com
FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
Lecture slides for the course RNA-seq data analysis with Chipster
This material covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis. It discusses also experimental design. Material updated in Dec 2015.
Keywords: FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
Lecture slides for the course RNA-seq data analysis with Chipster
https://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/RNA-Seq/Eija_Korpelainen/RNAseq_data_analysis_with_Chipster_2015/lectures_RNAseq_data_analysis_with_Chipster_2015.md
http://tess.elixir-uk.org/materials/lecture-slides-for-the-course-rna-seq-data-analysis-with-chipster
This material covers the whole RNA-seq data analysis pipeline, from quality control of raw reads to differential expression analysis. It discusses also experimental design. Material updated in Dec 2015.
Eija Korpelainen @eija, ekorpelainen@gmail.com
FASTQ, QC, Pre-processing, Alignment, BAM, Expression-estimation, Feature-summarisation, Differential-expression, Statistical-model, Exploratory-analysis
