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Authors: Christophe Klopp 

and

Resource type: PDF 


PacBio de novo genome assembly - Hands on exercise

  • Produce an assembled genomes from read file(s).
  • Produce genomes with : --ā€“ the awaited length, ā€“ few errors (INDELs).
  • Use different software packages to produce the genomes.
  • Understand the command line structure and some of the parameters used by the assemblers.
  • Polish the genome...

Resource type: PDF

Genome assembly with long reads

  • News
  • PacBio read production and error patterns
  • Nanopore read production and error patterns
  • Assembly strategies
  • Assembly results
  • Conclusions

Resource type: PDF