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17 materials found

Authors: András Aszódi 

Regular expressions

This course introduces regular expressions and how to search for text patterns in a number of programming languages (UNIX command line, R, Python etc.). It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

Regular expressions http://tess.elixir-uk.org/materials/regular-expressions This course introduces regular expressions and how to search for text patterns in a number of programming languages (UNIX command line, R, Python etc.). It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
AWK and BASH scripting

This course introduces scripting with AWK and BASH. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

AWK and BASH scripting http://tess.elixir-uk.org/materials/awk-and-bash-scripting This course introduces scripting with AWK and BASH. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.
ANOVA with R

The aim of this short course is to explain why we have to analyse variances if we want to compare group means using ANOVA techniques. This lecture may be included in the Linear regression with R course. Please note that we cannot go into the specific data analysis problems of your particular...

ANOVA with R http://tess.elixir-uk.org/materials/anova-with-r The aim of this short course is to explain why we have to analyse variances if we want to compare group means using ANOVA techniques. This lecture may be included in the Linear regression with R course. Please note that we cannot go into the specific data analysis problems of your particular project.
Advanced plotting with ggplot in R

The aim of this course is to teach you how to create informative scientific plots using the ggplot package in R.

Advanced plotting with ggplot in R http://tess.elixir-uk.org/materials/advanced-plotting-with-ggplot-in-r The aim of this course is to teach you how to create informative scientific plots using the ggplot package in R.
Statistics with R

The aim of this course is to teach you how to perform basic statistical analysis using R. First we review the foundations (sampling theory, discrete and continuous distributions), then we focus on classical hypothesis testing. This course will improve your generic statistics knowledge. We...

Statistics with R http://tess.elixir-uk.org/materials/statistics-with-r-70bbe42a-0729-4f11-b2e8-7cf281e74533 The aim of this course is to teach you how to perform basic statistical analysis using R. First we review the foundations (sampling theory, discrete and continuous distributions), then we focus on classical hypothesis testing. This course will improve your generic statistics knowledge. We cannot go into the specific data analysis problems of your particular project. 2017-10-09
Python programming primer

The purpose of this training is to teach general programming concepts using Python as an instruction tool.

Python programming primer http://tess.elixir-uk.org/materials/python-programming-primer-dd4b3b9e-a5cb-4a94-88bb-24eeeff92f27 The purpose of this training is to teach general programming concepts using Python as an instruction tool. 2017-10-09
R as a programming language

This course is aimed at colleagues who would like to learn how to use the statistical programming language "R". We will learn about the data structures and functions in R, and how to write R scripts.

R as a programming language http://tess.elixir-uk.org/materials/r-as-a-programming-language-401a3243-45a4-40cc-9b88-265cc4ce80cc This course is aimed at colleagues who would like to learn how to use the statistical programming language "R". We will learn about the data structures and functions in R, and how to write R scripts. 2017-10-09
UNIX command line

This course introduces the UNIX command line on a Linux or Mac. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

UNIX command line http://tess.elixir-uk.org/materials/unix-command-line-and-scripting-d6803e90-5f26-40e2-98cd-6128b0d7485d This course introduces the UNIX command line on a Linux or Mac. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters. 2017-10-09
Scientific writing

The title says it all: we teach the participants how to write good scientific texts.

Scientific writing http://tess.elixir-uk.org/materials/scientific-writing The title says it all: we teach the participants how to write good scientific texts. 2017-10-09
Linear regression with R

The aim of this course is to teach you how to fit linear models to your data using R. We focus on linear regression and generalised linear models (GLMs) in order to improve your generic statistics knowledge. Please note that we cannot go into the specific data analysis problems of your...

Linear regression with R http://tess.elixir-uk.org/materials/linear-models-with-r The aim of this course is to teach you how to fit linear models to your data using R. We focus on linear regression and generalised linear models (GLMs) in order to improve your generic statistics knowledge. Please note that we cannot go into the specific data analysis problems of your particular project. 2017-10-09
Grant writing workshop

The title says it all: we teach the participants how to write good grant applications. If you are a PhD student in your final year, a postdoc or a group leader, then you will profit a lot from this practical workshop.

Grant writing workshop http://tess.elixir-uk.org/materials/grant-writing-workshop The title says it all: we teach the participants how to write good grant applications. If you are a PhD student in your final year, a postdoc or a group leader, then you will profit a lot from this practical workshop. 2016-05-12
Statistics with R

The aim of this course is to teach you how to perform basic statistical analysis using R. First we review the foundations (sampling theory, discrete and continuous distributions), then we focus on classical hypothesis testing. This course will improve your generic statistics knowledge....

Scientific topics: Statistics and probability

Keywords: Biostatistics, R

Statistics with R http://tess.elixir-uk.org/materials/statistics-with-r The aim of this course is to teach you how to perform basic statistical analysis using R. First we review the foundations (sampling theory, discrete and continuous distributions), then we focus on classical hypothesis testing. This course will improve your generic statistics knowledge. Topics: Sampling theory: obtaining information about a population via sampling. Sample characteristics (location, dispersion, skewness), estimation of the mean, standard error of the mean. Discrete and continuous probability distributions. Central limit theorem. Hypothesis testing. Basic principles, one- and two-sided testing, types of errors, power calculations. "Cookbook of tests": location testing, normality, variance comparisons, counting statistics, contingency tables, regression tests. Statistics and probability Biostatistics, R 2016-04-21 2017-10-09
IMP/IMBA HPC cluster introduction

This course provides an introduction to the IMP/IMBA high-performance computing cluster.

IMP/IMBA HPC cluster introduction http://tess.elixir-uk.org/materials/imp-imba-hpc-cluster-introduction This course provides an introduction to the IMP/IMBA high-performance computing cluster. 2017-10-09
GMI "Mendel" cluster introduction

This course provides an introduction to the GMI high-performance computing cluster "Mendel".

GMI "Mendel" cluster introduction http://tess.elixir-uk.org/materials/gmi-mendel-cluster-introduction This course provides an introduction to the GMI high-performance computing cluster "Mendel". 2017-10-09
Python programming primer

The purpose of this training is to teach general programming concepts using Python as an instruction tool. Topics: Introduction to Python: basic principles. Python data structures: strings, tuples, lists, dictionaries, sets. Object-oriented programming: how to model coffee machines in Python...

Scientific topics: Software engineering

Keywords: Python biologists

Python programming primer http://tess.elixir-uk.org/materials/python-programming-primer The purpose of this training is to teach general programming concepts using Python as an instruction tool. Topics: Introduction to Python: basic principles. Python data structures: strings, tuples, lists, dictionaries, sets. Object-oriented programming: how to model coffee machines in Python :-). Inheritance (base and derived classes), polymorphism. Write your own script to convert BED files to GFF. Command-line option processing, file I/O, error handling. Software engineering Python biologists 2016-04-21 2017-10-09
R as a programming language

This course is aimed at colleagues who would like to learn how to use the statistical programming language "R". We will learn about the data structures and functions in R, and how to write R scripts. Topics: Introduction to R: general principles. Data structures in R: vectors, matrices, arrays,...

Keywords: R programming

R as a programming language http://tess.elixir-uk.org/materials/r-as-a-programming-language This course is aimed at colleagues who would like to learn how to use the statistical programming language "R". We will learn about the data structures and functions in R, and how to write R scripts. Topics: Introduction to R: general principles. Data structures in R: vectors, matrices, arrays, lists, data frames. Data import/export. Functions in R: how to write your own functions and scripts. Visualization in R: various plot types (built-in graphics only). R programming 2016-04-21 2017-10-09
UNIX command line and scripting

The first part of this course introduces the UNIX command line on a Linux or Mac. The second part provides a basic introduction to string searches and scripting with AWK and BASH.

Keywords: Awk, Bash, Unix

UNIX command line and scripting http://tess.elixir-uk.org/materials/unix-command-line-and-scripting The first part of this course introduces the UNIX command line on a Linux or Mac. The second part provides a basic introduction to string searches and scripting with AWK and BASH. Awk, Bash, Unix 2016-04-21 2017-10-09