Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

• How is raw CLIP-Seq data processed and analysed?
• How do I find binding motifs and targets for a protein (e.g., RBFOX2)?

Objectives of the tutorial:

• Remove Adapters, Barcodes and Unique Molecular...

Resources related to configuration and maintenance of Galaxy servers

Questions of the tutorial:

• Why Ansible?
• How and when to use Ansible?
• How to write a role?
• How to leverage community build roles?

Objectives of the tutorial:

• Learn Ansible basics
• Write a simple role
• Install a...

A collection of microtutorials explaining data manipulation within Galaxy

Questions of the tutorial:

• How to use the rule based uploader to create complex collections

Objectives of the tutorial:

• Learn about the Rule Based Uploader

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

ChIP-sequencing is a method used to analyze protein interactions with DNA.

Questions of the tutorial:

• How is raw ChIP-seq data processed and analyzed?
• What are the binding sites of the Estrogen receptor?

Objectives of the tutorial:

• Inspect read quality with FastQC
• Map reads with...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

• What are Galaxy Interactive Environments (GIEs)?
• How to enable GIEs in Galaxy?
• How to develop your own...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

• What is a Tool Shed?
• How to install tools and workflows from a Tool Shed into a Galaxy instance?
• What...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Questions of the tutorial:

• What is a Galaxy Interactive Tour?
• How to create a Galaxy Interactive Tour?

Objectives of the...

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

Exome sequencing means that all protein-coding genes in a genome are sequenced

Questions of the tutorial:

• How to identify the genetic variation with the use of exome sequencing?
• What is the pipeline of the process of finding genetic variation which caused the disease?

Objectives of the...

Exome sequencing means that all protein-coding genes in a genome are sequenced

Resources related to configuration and maintenance of Galaxy servers

Resources related to configuration and maintenance of Galaxy servers

Questions of the tutorial:

• Why Docker? What is it?
• How to use Docker?
• How to integrate Galaxy in Docker to facilitate its deployment?

Objectives of the tutorial:

• Docker basics
• Galaxy Docker image (usage)
• Galaxy...

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Questions of the tutorial:

• How to use Galaxy?
• How to get...

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

• What are the effects of Pasilla (PS) gene depletion on splicing events?
• How to analyze RNA sequencing data using a reference genome?

Objectives of the tutorial:

• Analysis of RNA sequencing data using...

Training material for all kinds of transcriptomics analysis.

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

Questions of the tutorial:

• How to analyze metagenomics data?
• What information can be extracted of metagenomics data?
• What is the difference between amplicon and shotgun data?
• What are the difference...

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

Metagenomics is a discipline that enables the genomic study of uncultured microorganisms

Questions of the tutorial:

• What is the effect of normal variation in the gut microbiome on host health?

Objectives of the tutorial:

• Analyze of 16S rRNA sequencing data using the Mothur toolsuite in...