Pathways and Network Analysis of -Omics data 2018 Module 4-More Depth on Network and Pathway Analysis
Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.
Pathways and Network Analysis of -Omics data 2018 Module 4-More Depth on Network and Pathway Analysis
https://bioinformaticsdotca.github.io/pathways_2018
http://tess.elixir-uk.org/materials/pathways-and-network-analysis-of-omics-data-2018-module-4-more-depth-on-network-and-pathway-analysis
Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.
Lincoln Stein
Robin Haw
Researchers
Post-Doctoral Fellows
Graduate Students
Biologists, Genomicists, Computer Scientists
Bioinformatics for Cancer Genomics 2018 Module 14-Variants to Networks
Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.
Bioinformatics for Cancer Genomics 2018 Module 14-Variants to Networks
https://bioinformaticsdotca.github.io/bicg_2018
http://tess.elixir-uk.org/materials/bioinformatics-for-cancer-genomics-2018-module-14-variants-to-networks
Course covers the key bioinformatics concepts and tools required to analyze cancer genomic data sets and access and work with data sets in the cloud.
Robin Haw
Researchers
Post-Doctoral Fellows
Biologists, Genomicists, Computer Scientists
Graduate Students
Galaxy Server administration - Ansible
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Why Ansible?
- How and when to use Ansible?
- How to write a role?
- How to leverage community build roles?
Objectives of the tutorial:
- Learn Ansible basics
- Write a simple role
- Install a...
Galaxy Server administration - Ansible
http://galaxyproject.github.io/training-material/topics/admin/tutorials/ansible/tutorial.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-ansible
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Why Ansible?
- How and when to use Ansible?
- How to write a role?
- How to leverage community build roles?
Objectives of the tutorial:
- Learn Ansible basics
- Write a simple role
- Install a role from Ansible Galaxy
erasche
Pathways and Network Analysis with -Omics Data 2017 Module 4-More Depth on Network and Pathway Analysis
Course covers the bioinformatics tools available for analyzing and conducting pathway and network analysis on a gene list.
Pathways and Network Analysis with -Omics Data 2017 Module 4-More Depth on Network and Pathway Analysis
https://bioinformaticsdotca.github.io/pathways_2017
http://tess.elixir-uk.org/materials/pathways-and-network-analysis-with-omics-data-2017-module-4-more-depth-on-network-and-pathway-analysis
Course covers the bioinformatics tools available for analyzing and conducting pathway and network analysis on a gene list.
Lincoln Stein
Robin Haw
Bioinformatics for Cancer Genomics 2017 Module 8-Variants to Networks
Course covers the bioinformatics tools required to analyze genomic data sets.
Bioinformatics for Cancer Genomics 2017 Module 8-Variants to Networks
https://bioinformaticsdotca.github.io//bicg_2017
http://tess.elixir-uk.org/materials/bioinformatics-for-cancer-genomics-2017-module-8-variants-to-networks
Course covers the bioinformatics tools required to analyze genomic data sets.
Juri Reimand
Lincoln Stein
Robin Haw
High-Throughput Biology 2017 Module 15-More Depth on Network and Pathway Analysis
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
High-Throughput Biology 2017 Module 15-More Depth on Network and Pathway Analysis
https://bioinformaticsdotca.github.io/high-throughput_biology_2017
http://tess.elixir-uk.org/materials/high-throughput-biology-2017-module-15-more-depth-on-network-and-pathway-analysis
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
Robin Haw
Researchers
Graduate students
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
Data Manipulation - Collections: Rule Based Uploader
A collection of microtutorials explaining data manipulation within Galaxy
Questions of the tutorial:
- How to use the rule based uploader to create complex collections
Objectives of the tutorial:
- Learn about the Rule Based Uploader
Data Manipulation - Collections: Rule Based Uploader
http://galaxyproject.github.io/training-material/topics/galaxy-data-manipulation/tutorials/upload-rules/tutorial.html
http://tess.elixir-uk.org/materials/data-manipulation-collections-rule-based-uploader
A collection of microtutorials explaining data manipulation within Galaxy
Questions of the tutorial:
- How to use the rule based uploader to create complex collections
Objectives of the tutorial:
- Learn about the Rule Based Uploader
jmchilton
erasche
Contributing to the Galaxy Training Material - Creating a new tutorial - Slides
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Contributing to the Galaxy Training Material - Creating a new tutorial - Slides
http://galaxyproject.github.io/training-material/topics/contributing/tutorials/create-new-tutorial-slides/slides.html
http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-creating-a-new-tutorial-slides
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Questions of the tutorial:
- How to format slides?
- How do we add presenter notes?
- How to use the features of the slide show tool?
- What sort of content should be included in slides?
Objectives of the tutorial:
- Create a new set of slides
- Add presenter comments
erasche
bebatut
shiltemann
Development in Galaxy - Galaxy Interactive Environments
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Interactive Environments (GIEs)?
- How to enable GIEs in Galaxy?
- How to develop your own...
Development in Galaxy - Galaxy Interactive Environments
http://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-environments/slides.html
http://tess.elixir-uk.org/materials/development-in-galaxy-galaxy-interactive-environments
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Interactive Environments (GIEs)?
- How to enable GIEs in Galaxy?
- How to develop your own GIE?
Objectives of the tutorial:
- Implement a Hello-World Galaxy Interactive Environment
shiltemann
bgruening
erasche
Galaxy Server administration - Advanced customisation of a Galaxy instance
Resources related to configuration and maintenance of Galaxy servers
Galaxy Server administration - Advanced customisation of a Galaxy instance
http://galaxyproject.github.io/training-material/topics/admin/tutorials/advanced-galaxy-customisation/slides.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-advanced-customisation-of-a-galaxy-instance
Resources related to configuration and maintenance of Galaxy servers
bgruening
erasche
martenson
