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10 materials found

Authors: erasche  or Christine Staiger 


Introduction to Persistent Identifiers

Module also available as self-study material in data carpentry style

Scientific topics: Data management

Keywords: system relevant metadata for data, PID metadata, Python API pyhandle, Persistent Identifiers

Resource type: course materials

Introduction to Persistent Identifiers http://tess.elixir-uk.org/materials/introduction-to-persistent-identifiers Module also available as self-study material in data carpentry style Data management system relevant metadata for data, PID metadata, Python API pyhandle, Persistent Identifiers data stewards data managers bioinformaticians
Helis Academy - Persistent identifiers and their use cases

Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source

Keywords: Referencing data and code, Findability of data and code, Identifying data and code, data management

Resource type: Slides

Helis Academy - Persistent identifiers and their use cases http://tess.elixir-uk.org/materials/persistent-identifiers-and-their-use-cases Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source Referencing data and code, Findability of data and code, Identifying data and code, data management data stewards Life Science Researchers bioinformaticians
Helis Academy - Data Sharing, publishing and archiving

Basic knowledge of: o Know what a repository is o Characteristics of Data Sharing, Archiving and Publishing o Knowledge of major platforms for Sharing, Archiving and Publishing Hands on experience: o Dataverse possibilities for sharing and publishing o Designing requirements digital...

Keywords: data sharing, Data publishing, data archiving, data repositories, data management

Resource type: Slides

Helis Academy - Data Sharing, publishing and archiving http://tess.elixir-uk.org/materials/data-sharing-publishing-and-archiving Basic knowledge of: o Know what a repository is o Characteristics of Data Sharing, Archiving and Publishing o Knowledge of major platforms for Sharing, Archiving and Publishing Hands on experience: o Dataverse possibilities for sharing and publishing o Designing requirements digital archives o Finding your ideal archive data sharing, Data publishing, data archiving, data repositories, data management
Introduction to FAIR data stewardship

FAIR data Stewardship: How to improve the reuse of nanosafety data

Scientific topics: Data management

Keywords: FAIR

Introduction to FAIR data stewardship http://tess.elixir-uk.org/materials/introduction-to-fair-data-stewardship FAIR data Stewardship: How to improve the reuse of nanosafety data Data management FAIR Life Science Researchers
FAIR Data Stewardship - Data sharing, archiving and publishing

The workshop introduces the concepts and gives hands-on experience with tools which allow safe data sharing, archiving and publishing on example services. Moreover, participants of the workshop explore together different roles which are defined around data publication and how responsibilities...

Keywords: Data Life Cycle, FAIR, data management, data stewardship, data repositories, data sharing, data publication

Resource type: Slides, Training materials

FAIR Data Stewardship - Data sharing, archiving and publishing http://tess.elixir-uk.org/materials/fair-data-stewardship-data-sharing-archiving-and-publishing The workshop introduces the concepts and gives hands-on experience with tools which allow safe data sharing, archiving and publishing on example services. Moreover, participants of the workshop explore together different roles which are defined around data publication and how responsibilities towards data are distributed. The course does not require any prior knowledge. Data Life Cycle, FAIR, data management, data stewardship, data repositories, data sharing, data publication General Interest Scientists Researchers data stewards
Galaxy Server administration - Ansible

Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - Why Ansible? - How and when to use Ansible? - How to write a role? - How to leverage community build roles? Objectives of the tutorial: - Learn Ansible basics - Write a simple role - Install a...

Resource type: Tutorial

Galaxy Server administration - Ansible http://tess.elixir-uk.org/materials/galaxy-server-administration-ansible Resources related to configuration and maintenance of Galaxy servers Questions of the tutorial: - Why Ansible? - How and when to use Ansible? - How to write a role? - How to leverage community build roles? Objectives of the tutorial: - Learn Ansible basics - Write a simple role - Install a role from Ansible Galaxy
Data Manipulation - Collections: Rule Based Uploader

A collection of microtutorials explaining data manipulation within Galaxy Questions of the tutorial: - How to use the rule based uploader to create complex collections Objectives of the tutorial: - Learn about the Rule Based Uploader

Resource type: Tutorial

Data Manipulation - Collections: Rule Based Uploader http://tess.elixir-uk.org/materials/data-manipulation-collections-rule-based-uploader A collection of microtutorials explaining data manipulation within Galaxy Questions of the tutorial: - How to use the rule based uploader to create complex collections Objectives of the tutorial: - Learn about the Rule Based Uploader
Contributing to the Galaxy Training Material - Creating a new tutorial - Slides

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...

Resource type: Slides

Contributing to the Galaxy Training Material - Creating a new tutorial - Slides http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-creating-a-new-tutorial-slides Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy. Questions of the tutorial: - How to format slides? - How do we add presenter notes? - How to use the features of the slide show tool? - What sort of content should be included in slides? Objectives of the tutorial: - Create a new set of slides - Add presenter comments
Development in Galaxy - Galaxy Interactive Environments

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What are Galaxy Interactive Environments (GIEs)? - How to enable GIEs in Galaxy? - How to develop your own...

Resource type: Slides

Development in Galaxy - Galaxy Interactive Environments http://tess.elixir-uk.org/materials/development-in-galaxy-galaxy-interactive-environments Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Questions of the tutorial: - What are Galaxy Interactive Environments (GIEs)? - How to enable GIEs in Galaxy? - How to develop your own GIE? Objectives of the tutorial: - Implement a Hello-World Galaxy Interactive Environment
Galaxy Server administration - Advanced customisation of a Galaxy instance

Resources related to configuration and maintenance of Galaxy servers

Resource type: Slides

Galaxy Server administration - Advanced customisation of a Galaxy instance http://tess.elixir-uk.org/materials/galaxy-server-administration-advanced-customisation-of-a-galaxy-instance Resources related to configuration and maintenance of Galaxy servers