Rare Disease Pathway and Network Analysis
The European Joint Project on Rare Diseases (EJP-RD) and the Helis Academy organized a workshop with training for pathway and network analysis.
Keywords: Pathway analysis, Biological networks, Network analysis, Pathways
Resource type: Tutorial
Rare Disease Pathway and Network Analysis
https://laurendupuis.github.io/EJP-RD_Helis_Academy/
http://tess.elixir-uk.org/materials/rare-disease-pathway-and-network-analysis
The European Joint Project on Rare Diseases (EJP-RD) and the Helis Academy organized a workshop with training for pathway and network analysis.
Lauren Dupuis
Martina Kutmon
Friederike Ehrhart
Denise Slenter
Pathway analysis, Biological networks, Network analysis, Pathways
Life Science Researchers
How to use the statistics module of ArrayAnalysis.org for statistics analysis of microarray data
This tutorial how to statistically analyze microarray data with ArrayAnalysis.org website.
Keywords: ArrayAnalysis.org, microarray
How to use the statistics module of ArrayAnalysis.org for statistics analysis of microarray data
https://enanomapper.github.io/tutorials/Statistics/readme.html
http://tess.elixir-uk.org/materials/how-to-use-the-statistics-module-of-arrayanalysis-org-for-statistics-analysis-of-microarray-data
This tutorial how to statistically analyze microarray data with ArrayAnalysis.org website.
Anwesha Bohler
Egon Willighagen
Friederike Ehrhart
Lars Eijssen
Linda Rieswijk
Penny Nymark
ArrayAnalysis.org, microarray
post-docs
Informatics for RNA-Seq Analysis 2018 Module 4-Reference Free Alignment
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Informatics for RNA-Seq Analysis 2018 Module 4-Reference Free Alignment
https://bioinformaticsdotca.github.io/rnaseq_2018
http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2018-module-4-reference-free-alignment
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Malachi Griffith
Researchers
Post-Doctoral Fellows
Biologists, Genomicists, Computer Scientists
Graduate Students
Informatics for RNA-Seq Analysis 2018 Module 1-Introduction to RNA Sequencing Analysis
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Informatics for RNA-Seq Analysis 2018 Module 1-Introduction to RNA Sequencing Analysis
https://bioinformaticsdotca.github.io/rnaseq_2018
http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2018-module-1-introduction-to-rna-sequencing-analysis
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Malachi Griffith
Researchers
Biologists, Genomicists, Computer Scientists
Graduate students
Post-Doctoral Fellows
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping.
Scientific topics: Genomics, Genetic variation
Keywords: ELIXIR RIR, BridgeDb
Resource type: Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
https://bigcat-um.github.io/BridgeDbVariantDatabase/Local_BridgeDb_IMS_installation.html
http://tess.elixir-uk.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping.
Friederike Ehrhart
Jonathan Mélius
Egon Willighagen
Genomics
Genetic variation
ELIXIR RIR, BridgeDb
Biologists
Informatics for RNA-Seq Analysis 2017 Module 5-Isoform Discovery and Alternative Expression
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Informatics for RNA-Seq Analysis 2017 Module 5-Isoform Discovery and Alternative Expression
https://bioinformaticsdotca.github.io/rnaseq_2017
http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2017-module-5-isoform-discovery-and-alternative-expression
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Malachi Griffith
Researchers
Graduate students
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 4-Reference Free Alignment
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Informatics for RNA-Seq Analysis 2017 Module 4-Reference Free Alignment
https://bioinformaticsdotca.github.io/rnaseq_2017
http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2017-module-4-reference-free-alignment
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Malachi Griffith
Researchers
Graduate Students
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
Informatics for RNA-Seq Analysis 2017 Module 1-Introduction to RNA Sequencing Analysis
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Informatics for RNA-Seq Analysis 2017 Module 1-Introduction to RNA Sequencing Analysis
https://bioinformaticsdotca.github.io/rnaseq_2017
http://tess.elixir-uk.org/materials/informatics-for-rna-seq-analysis-2017-module-1-introduction-to-rna-sequencing-analysis
Course providing an introduction to RNA-seq data analysis followed by integrated tutorials demonstrating the use of popular RNA-seq analysis packages.
Malachi Griffith
Researchers
Graduate students
Post-Doctoral Fellows
Biologists, Genomicists, Computer Scientists
High-Throughput Biology 2017 Module 11-Isoform Discovery and Alternative Expression
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
High-Throughput Biology 2017 Module 11-Isoform Discovery and Alternative Expression
https://bioinformaticsdotca.github.io/high-throughput_biology_2017
http://tess.elixir-uk.org/materials/high-throughput-biology-2017-module-11-isoform-discovery-and-alternative-expression
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
Malachi Griffith
Graduate Students
Researchers
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
High-Throughput Biology 2017 Module 10-Reference Free Alignment
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
High-Throughput Biology 2017 Module 10-Reference Free Alignment
https://bioinformaticsdotca.github.io/high-throughput_biology_2017
http://tess.elixir-uk.org/materials/high-throughput-biology-2017-module-10-reference-free-alignment
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
Malachi Griffith
Graduate students
Researchers
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
High-Throughput Biology 2017 Module 7-Introduction to RNA Sequencing Analysis
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
High-Throughput Biology 2017 Module 7-Introduction to RNA Sequencing Analysis
https://bioinformaticsdotca.github.io/high-throughput_biology_2017
http://tess.elixir-uk.org/materials/high-throughput-biology-2017-module-7-introduction-to-rna-sequencing-analysis
Course covers the key bioinformatics concepts and tools required to analyze DNA- and RNA- sequence reads using a reference genome.
Malachi Griffith
Graduate students
Researchers
Biologists, Genomicists, Computer Scientists
Post-Doctoral Fellows
Browsing the eNanoMapper ontology with BioPortal, AberOWL and Protégé
This tutorial explains how the eNanoMapper ontology can be browsed with three tools, of which two are online.
Keywords: nanotoxicology, Ontologies, BioPortal, AberOWL, Protégé
Resource type: Tutorial
Browsing the eNanoMapper ontology with BioPortal, AberOWL and Protégé
https://enanomapper.github.io/tutorials/BrowseOntology/Tutorial%20browsing%20eNM%20ontology.html
http://tess.elixir-uk.org/materials/browsing-the-enanomapper-ontology-with-bioportal-aberowl-and-protege
This tutorial explains how the eNanoMapper ontology can be browsed with three tools, of which two are online.
Egon Willighagen
Friederike Ehrhart
Linda Rieswijk
nanotoxicology, Ontologies, BioPortal, AberOWL, Protégé
PhD students
post-docs
