Genome Annotation - Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
Genome Annotation - Genome Annotation
http://galaxyproject.github.io/training-material/topics/genome-annotation/tutorials/genome-annotation/tutorial.html
http://tess.elixir-uk.org/materials/genome-annotation-genome-annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
joachimwolff
erxleben
bgruening
Contributing to the Galaxy Training Material - Running the Galaxy Training material website locally
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Contributing to the Galaxy Training Material - Running the Galaxy Training material website locally
http://galaxyproject.github.io/training-material/topics/contributing/tutorials/running-jekyll/tutorial.html
http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-running-the-galaxy-training-material-website-locally
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Questions of the tutorial:
- How to setup the infrastructure to build training webpages?
Objectives of the tutorial:
- Installing packages needed for rendering the webpage
- Running the GTN material website locally
- Tracking changes to the content live in the webbrowser
bebatut
bgruening
shiltemann
Contributing to the Galaxy Training Material - Creating a new tutorial - Creating Interactive Galaxy Tours
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Contributing to the Galaxy Training Material - Creating a new tutorial - Creating Interactive Galaxy Tours
http://galaxyproject.github.io/training-material/topics/contributing/tutorials/create-new-tutorial-tours/tutorial.html
http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-creating-a-new-tutorial-creating-interactive-galaxy-tours
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Questions of the tutorial:
- What is a Interactive Galaxy Tour?
- How can we create an Interactive Tour?
Objectives of the tutorial:
- Creating a Galaxy tour from scratch
- Deploying and running a tour
bebatut
bgruening
shiltemann
Contributing to the Galaxy Training Material - Creating a new tutorial - Defining the technical infrastructure
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Contributing to the Galaxy Training Material - Creating a new tutorial - Defining the technical infrastructure
http://galaxyproject.github.io/training-material/topics/contributing/tutorials/create-new-tutorial-technical/tutorial.html
http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-creating-a-new-tutorial-defining-the-technical-infrastructure
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Questions of the tutorial:
- How can we define the technical infrastructure for a tutorial?
- How to define the tools needed for a tutorial?
- How to add the needed data directly in an instance?
- How to add the workflows related to a tutorial?
- How can we check the technical infrastructure is working?
- How can we make an existing Galaxy instance able to run a tutorial?
Objectives of the tutorial:
- Extracting the technical description for a tutorial
- Populating an existing instance with the needed tools, data and workflows for a tutorial
- Creating a Galaxy Docker flavor with the needed tools, data and workflows for a tutorial
- Testing the Galaxy Docker flavor of a tutorial
bebatut
bgruening
shiltemann
Contributing to the Galaxy Training Material - Creating a new tutorial - Writing content in Markdown
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Contributing to the Galaxy Training Material - Creating a new tutorial - Writing content in Markdown
http://galaxyproject.github.io/training-material/topics/contributing/tutorials/create-new-tutorial-content/tutorial.html
http://tess.elixir-uk.org/materials/contributing-to-the-galaxy-training-material-creating-a-new-tutorial-writing-content-in-markdown
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable. In 2016, the Galaxy Training Network decide to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Questions of the tutorial:
- How to write a tutorial with hands-on?
- What are the different boxes?
- How can I add a caption to an image?
Objectives of the tutorial:
- Create hands-on
- Use the different boxes
bebatut
bgruening
shiltemann
Galaxy Server administration - Connecting Galaxy to a compute cluster
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- How to connect Galaxy to a compute cluster?
- How can I configure job dependent resources, like cores, memory for my DRM?
Objectives of the tutorial:
- Be familiar with the basics of installing,...
Galaxy Server administration - Connecting Galaxy to a compute cluster
http://galaxyproject.github.io/training-material/topics/admin/tutorials/connect-to-compute-cluster/tutorial.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-connecting-galaxy-to-a-compute-cluster
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- How to connect Galaxy to a compute cluster?
- How can I configure job dependent resources, like cores, memory for my DRM?
Objectives of the tutorial:
- Be familiar with the basics of installing, configuring, and using Slurm
- Understand all components of the Galaxy job running stack
- Understand how the `job_conf.xml` file controls Galaxy's jobs subsystem
- Have a strong understanding of Galaxy job destinations
- Know how to map tools to job destinations
- Be able to use the dynamic job runner to make arbitrary destination mappings
- Understand the job resource selector config and dynamic rule creation
natefoo
bgruening
Galaxy Server administration - User, Group and Quota managment
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- How does Galaxy manage users and groups?
- How can I assign Quotas to specific users/groups?
Objectives of the tutorial:
- Learn the Galaxy user/group management and assign Quotas.
- Understand...
Galaxy Server administration - User, Group and Quota managment
http://galaxyproject.github.io/training-material/topics/admin/tutorials/users-groups-quotas/slides.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-user-group-and-quota-managment
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- How does Galaxy manage users and groups?
- How can I assign Quotas to specific users/groups?
Objectives of the tutorial:
- Learn the Galaxy user/group management and assign Quotas.
- Understand the Role Based Access Control (RBAC) of Galaxy.
natefoo
bgruening
Proteomics - Peptide and Protein ID using OpenMS tools
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?
Objectives of the tutorial:
- Protein identification from LC-MS/MS raw files.
Proteomics - Peptide and Protein ID using OpenMS tools
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/protein-id-oms/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-peptide-and-protein-id-using-openms-tools
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?
Objectives of the tutorial:
- Protein identification from LC-MS/MS raw files.
stortebecker
bgruening
Proteomics - Detection and quantitation of N-termini (degradomics) via N-TAILS
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How can protein N-termini be enriched for LC-MS/MS?
- How to analyze the LC-MS/MS data?
Objectives of the tutorial:
- Run an N-TAILS data analysis.
Proteomics - Detection and quantitation of N-termini (degradomics) via N-TAILS
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/ntails/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-ntails
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How can protein N-termini be enriched for LC-MS/MS?
- How to analyze the LC-MS/MS data?
Objectives of the tutorial:
- Run an N-TAILS data analysis.
stortebecker
bgruening
Development in Galaxy - Galaxy Code Architecture
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- How is the Galaxy code structured?
- What do the various other projects related to Galaxy do?
- What...
Development in Galaxy - Galaxy Code Architecture
http://galaxyproject.github.io/training-material/topics/dev/tutorials/architecture/slides.html
http://tess.elixir-uk.org/materials/development-in-galaxy-galaxy-code-architecture
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- How is the Galaxy code structured?
- What do the various other projects related to Galaxy do?
- What happens when I start Galaxy?
Objectives of the tutorial:
- Explore various aspects of the Galaxy codebase.
- Understand the various top-level files and modules in Galaxy.
- Understand how dependencies work in Galaxy's frontend and backend.
jmchilton
bgruening
Development in Galaxy - Galaxy Webhooks
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Webhooks?
- How to create them?
Objectives of the tutorial:
- Discover what Galaxy...
Development in Galaxy - Galaxy Webhooks
http://galaxyproject.github.io/training-material/topics/dev/tutorials/webhooks/tutorial.html
http://tess.elixir-uk.org/materials/development-in-galaxy-galaxy-webhooks
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Webhooks?
- How to create them?
Objectives of the tutorial:
- Discover what Galaxy Webhooks are
- Be able to create Webhooks
- Be able to add a Galaxy Webhook in a Galaxy instance
blankclemens
martenson
bgruening
Development in Galaxy - Galaxy Interactive Environments
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Interactive Environments (GIEs)?
- How to enable GIEs in Galaxy?
- How to develop your own...
Development in Galaxy - Galaxy Interactive Environments
http://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-environments/slides.html
http://tess.elixir-uk.org/materials/development-in-galaxy-galaxy-interactive-environments
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Interactive Environments (GIEs)?
- How to enable GIEs in Galaxy?
- How to develop your own GIE?
Objectives of the tutorial:
- Implement a Hello-World Galaxy Interactive Environment
shiltemann
bgruening
erasche
Development in Galaxy - Visualizations: charts plugins
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- How can I make a custom plugin for Charts?
Objectives of the tutorial:
- Learn how to add custom...
Development in Galaxy - Visualizations: charts plugins
http://galaxyproject.github.io/training-material/topics/dev/tutorials/visualization-charts/tutorial.html
http://tess.elixir-uk.org/materials/development-in-galaxy-visualizations-charts-plugins
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- How can I make a custom plugin for Charts?
Objectives of the tutorial:
- Learn how to add custom javascript plugins to the Galaxy Charts framework
shiltemann
yhoogstrate
bgruening
guerler
Development in Galaxy - Galaxy Interactive Tours
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What is a Galaxy Interactive Tour?
- How to create a Galaxy Interactive Tour?
Objectives of the...
Development in Galaxy - Galaxy Interactive Tours
http://galaxyproject.github.io/training-material/topics/dev/tutorials/interactive-tours/slides.html
http://tess.elixir-uk.org/materials/development-in-galaxy-galaxy-interactive-tours
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What is a Galaxy Interactive Tour?
- How to create a Galaxy Interactive Tour?
Objectives of the tutorial:
- Discover what is a Galaxy Interactive Tour
- Be able to create a Galaxy Interactive Tour
- Be able to add a Galaxy Interactive Tour in a Galaxy instance
bebatut
bgruening
Variant Analysis - Exome sequencing data analysis
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How to identify the genetic variation with the use of exome sequencing?
- What is the pipeline of the process of finding genetic variation which caused the disease?
Objectives of the...
Variant Analysis - Exome sequencing data analysis
http://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/exome-seq/tutorial.html
http://tess.elixir-uk.org/materials/variant-analysis-exome-sequencing-data-analysis
Exome sequencing means that all protein-coding genes in a genome are sequenced
Questions of the tutorial:
- How to identify the genetic variation with the use of exome sequencing?
- What is the pipeline of the process of finding genetic variation which caused the disease?
Objectives of the tutorial:
- Identification of the genetic variation using the exome sequencing
- Using FreeBayes calls for variants generating
- Variant analysis and GEMINI queries
bebatut
torhou
erxleben
bgruening
Galaxy Server administration - Advanced customisation of a Galaxy instance
Resources related to configuration and maintenance of Galaxy servers
Galaxy Server administration - Advanced customisation of a Galaxy instance
http://galaxyproject.github.io/training-material/topics/admin/tutorials/advanced-galaxy-customisation/slides.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-advanced-customisation-of-a-galaxy-instance
Resources related to configuration and maintenance of Galaxy servers
bgruening
erasche
martenson
Galaxy Server administration - Galaxy Database schema
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Running a production Galaxy server, you some times end up in with a situation, where you manually need to interact with the Galaxy database: how do you do that
- How to extract usage information,...
Galaxy Server administration - Galaxy Database schema
http://galaxyproject.github.io/training-material/topics/admin/tutorials/database-schema/tutorial.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-galaxy-database-schema
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Running a production Galaxy server, you some times end up in with a situation, where you manually need to interact with the Galaxy database: how do you do that
- How to extract usage information, which can not be gathered using the given report tools
- How to move from MySQL to PostgreSQL
- Is there ever a need to manually change the contents of a table
Objectives of the tutorial:
- Learn some of the design concepts of the Galaxy database
- Extract information from the Galaxy database
- Get to know SchemaSpy
hrhotz
bgruening
Galaxy Server administration - Docker and Galaxy
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Why Docker? What is it?
- How to use Docker?
- How to integrate Galaxy in Docker to facilitate its deployment?
Objectives of the tutorial:
- Docker basics
- Galaxy Docker image (usage)
- Galaxy...
Galaxy Server administration - Docker and Galaxy
http://galaxyproject.github.io/training-material/topics/admin/tutorials/galaxy-docker/slides.html
http://tess.elixir-uk.org/materials/galaxy-server-administration-docker-and-galaxy
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Why Docker? What is it?
- How to use Docker?
- How to integrate Galaxy in Docker to facilitate its deployment?
Objectives of the tutorial:
- Docker basics
- Galaxy Docker image (usage)
- Galaxy Docker (internals)
- Galaxy flavours
bebatut
bgruening
Introduction to Galaxy Analyses - Galaxy 101
Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.
Questions of the tutorial:
- Which coding exon has the...
Introduction to Galaxy Analyses - Galaxy 101
http://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-101/tutorial.html
http://tess.elixir-uk.org/materials/galaxy-introduction-galaxy-101
Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.
Questions of the tutorial:
- Which coding exon has the highest number of single nucleotide polymorphisms (SNPs) on human chromosome 22?
Objectives of the tutorial:
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to run tools
- Learn how histories work
- Learn how to create a workflow
- Learn how to share your work
shiltemann
nsoranzo
blankclemens
nekrut
bgruening
pajanne
Introduction to Galaxy Analyses - From peaks to genes
Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.
Questions of the tutorial:
- How to use Galaxy?
- How to get...
Introduction to Galaxy Analyses - From peaks to genes
http://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html
http://tess.elixir-uk.org/materials/galaxy-introduction-from-peaks-to-genes
Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.
Questions of the tutorial:
- How to use Galaxy?
- How to get from peak regions to a list of gene names?
Objectives of the tutorial:
- Familiarize yourself with the basics of Galaxy
- Learn how to obtain data from external sources
- Learn how to run tools
- Learn how histories work
- Learn how to create a workflow
- Learn how to share your work
pajanne
blankclemens
bebatut
bgruening
nsoranzo
dyusuf
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- What are MS1 features?
- How to quantify based on MS1 features?
- How to map MS1 features to MS2 identifications?
- How to evaluate and optimize the results?
Objectives of the tutorial:
- MS1 feature...
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/protein-quant-sil/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-peptide-and-protein-quantification-via-stable-isotope-labelling-sil
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- What are MS1 features?
- How to quantify based on MS1 features?
- How to map MS1 features to MS2 identifications?
- How to evaluate and optimize the results?
Objectives of the tutorial:
- MS1 feature quantitation and mapping of quantitations to peptide and protein IDs.
stortebecker
bgruening
Proteomics - Peptide and Protein ID using SearchGUI and PeptideShaker
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?
Objectives of the tutorial:
- Protein identification from LC-MS/MS raw files.
Proteomics - Peptide and Protein ID using SearchGUI and PeptideShaker
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/protein-id-sg-ps/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-peptide-and-protein-id
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?
Objectives of the tutorial:
- Protein identification from LC-MS/MS raw files.
stortebecker
bgruening
Proteomics - Secretome Prediction
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to predict cellular protein localization based upon GO-terms?
- How to combine multiple localization predictions?
Objectives of the tutorial:
- Predict proteins in the cellular secretome by using...
Proteomics - Secretome Prediction
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/secretome-prediction/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-secretome-prediction
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to predict cellular protein localization based upon GO-terms?
- How to combine multiple localization predictions?
Objectives of the tutorial:
- Predict proteins in the cellular secretome by using GO-terms.
- Predict proteins in the cellular secretome by using WolfPSORT.
- Combine the results of both predictions.
stortebecker
bgruening
Proteomics - Label-free versus Labelled - How to Choose Your Quantitation Method
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- What are benefits and drawbacks of different quantitation methods?
- How to choose which quantitation method bests suits my need?
Objectives of the tutorial:
- Choose your quantitation method.
Proteomics - Label-free versus Labelled - How to Choose Your Quantitation Method
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/labelfree-vs-labelled/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-label-free-versus-labelled-how-to-choose-your-quantitation-method
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- What are benefits and drawbacks of different quantitation methods?
- How to choose which quantitation method bests suits my need?
Objectives of the tutorial:
- Choose your quantitation method.
stortebecker
bgruening
Proteomics - Protein FASTA Database Handling
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to download protein FASTA databases of a certain organism?
- How to download a contaminant database?
- How to create a decoy database?
- How to combine databases?
Objectives of the tutorial:
- Creation of a...
Proteomics - Protein FASTA Database Handling
http://galaxyproject.github.io/training-material/topics/proteomics/tutorials/database-handling/tutorial.html
http://tess.elixir-uk.org/materials/proteomics-protein-fasta-database-handling
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to download protein FASTA databases of a certain organism?
- How to download a contaminant database?
- How to create a decoy database?
- How to combine databases?
Objectives of the tutorial:
- Creation of a protein FASTA database ready for use with database search algorithms.
stortebecker
bgruening
