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12 materials found

Authors: Jessica Kirkpatrick krkptrc...  or nekrut 


Data Manipulation - Collections: Multisample Analysis

A collection of microtutorials explaining data manipulation within Galaxy

Resource type: Tutorial

Data Manipulation - Collections: Using dataset collection

A collection of microtutorials explaining data manipulation within Galaxy

Questions of the tutorial:

  • How to manipulate large numbers of datasets at once?

Objectives of the tutorial:

  • Understand and master dataset collections

Resource type: Tutorial

User Interface and Features - Histories: Understanding Galaxy history system

A collection of microtutorials explaining various features of the Galaxy user interface

Questions of the tutorial:

  • How do Galaxy histories work?

Objectives of the tutorial:

  • Gain understanding on navigating and manipulating histories

Resource type: Tutorial

Assembly - Making sense of a newly assembled genome

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Resource type: Tutorial

Variant Analysis - Calling very rare variants

Exome sequencing means that all protein-coding genes in a genome are sequenced

Questions of the tutorial:

  • What frequency of variants is so low that it is obscured by sequencing error rate?
  • What are the different types of consensus sequences produced from duplex sequencing?

Objectives of...

Resource type: Tutorial

Variant Analysis - Calling variants in diploid systems

Exome sequencing means that all protein-coding genes in a genome are sequenced

Questions of the tutorial:

  • How to find variable sites in diploid genomes?

Objectives of the tutorial:

  • Using Galaxy's main site we will see how to call variants in human genome.

Resource type: Tutorial

Variant Analysis - Calling variants in non-diploid systems

Exome sequencing means that all protein-coding genes in a genome are sequenced

Questions of the tutorial:

  • How does frequency of mitochondrial polymorphisms change from mother to child?

Objectives of the tutorial:

  • Using Galaxy's main site we will see how to call variants in bacteria,...

Resource type: Tutorial

Introduction to Galaxy Analyses - NGS data logistics

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Questions of the tutorial:

  • How to manipulate and process...

Resource type: Tutorial

Transcriptomics - Reference-based RNAseq data analysis (long)

Training material for all kinds of transcriptomics analysis.

Questions of the tutorial:

  • How to perform analysis of RNAseq data when reference genome is available?

Objectives of the tutorial:

  • Learns basic concepts of RNAseq analysis

Resource type: Tutorial

Assembly - Unicycler Assembly

DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome...

Resource type: Tutorial

Introduction to Galaxy Analyses - IGV Introduction

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Resource type: Tutorial

Introduction to Galaxy Analyses - Galaxy 101

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Questions of the tutorial:

  • Which coding exon has the...

Resource type: Tutorial