Register training material
9 materials found

Authors: Jan Slifka  or Stéphanie Robin 


Hands-on for 'Genome Assembly Quality Control' tutorial

The questions this addresses are:
- Is my genome assembly ready for annotation and/or scaffolding?

The objectives are:
- Assess assembly quality

Keywords: assembly, assembly, quality control

Resource type: hands-on tutorial

Slides for 'Genome assembly quality control.' tutorial

The questions this addresses are:
- Assembly: Is my genome assembly ready for scaffolding?
- Annotation: Is my genome assembly ready for structural annotation?

Keywords: assembly

Resource type: slides

Hands-on for 'Masking repeats with RepeatMasker' tutorial

The questions this addresses are:
- How to mask repeats in a genome?
- What is the difference between hard and soft-masking?

The objectives are:
- Use Red and RepeatMasker to soft-mask a newly assembled genome

Keywords: genome-annotation, eukaryote

Resource type: hands-on tutorial

Hands-on for 'Genome assembly using PacBio data' tutorial

The questions this addresses are:
- How to perform a genome assembly with PacBio data ?
- How to check assembly quality ?

The objectives are:
- Assemble a Genome with PacBio data
- Assess assembly quality

Keywords: assembly, assembly, pacbio

Resource type: hands-on tutorial

Hands-on for 'Quality Control' tutorial

The questions this addresses are:
- How to perform quality control of NGS raw data?
- What are the quality parameters to check for a dataset?
- How to improve the quality of a dataset?

The objectives are:
- Assess short reads FASTQ quality using FASTQE 🧬😎 and FastQC
- Assess long reads...

Keywords: sequence-analysis

Resource type: hands-on tutorial

Slides for 'Quality Control' tutorial

The questions this addresses are:
- How to control quality of NGS data?
- What are the quality parameters to check for each dataset?
- How to improve the quality of a sequence dataset?

The objectives are:
- Manipulate FASTQ files
- Control quality from a FASTQ file for short and long...

Keywords: sequence-analysis

Resource type: slides

DS Wizard and its Use

This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...

Scientific topics: Data management

Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data

Resource type: Presentation

A Gentle Introduction to DSW for Convergers

Data Stewardship Wizard brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...

Scientific topics: Data management, Data governance

Keywords: Data managment plan, data stewardship, data management, software tools

Resource type: Video, Slides, Webinar

Data Stewardship Wizard Workshop (Feb 2020)

Data Stewardship Wizard brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...

Scientific topics: Data governance, Data management

Keywords: Data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar, Slides