Register training material
13 materials found

Authors: Jan Slifka  or Fotis E. Psomopoulos 


Hands-on for 'Teaching experiences' tutorial

The questions this addresses are:
- How to teach using Galaxy?
- What are the different practises?

The objectives are:
- Learn how others teach using Galaxy

Keywords: teaching

Resource type: hands-on tutorial

Hands-on for 'Live Coding is a Skill' tutorial

The questions this addresses are:
- Why do we teach programming using participatory live coding?

The objectives are:
- Explain the advantages and limitations of participatory live coding.
- Summarize the key dos and do nots of participatory live coding.
- Demonstrate participatory live...

Keywords: teaching

Resource type: hands-on tutorial

Hands-on for 'RNA Seq Counts to Viz in R' tutorial

The questions this addresses are:
- How can I create neat visualizations of the data?

The objectives are:
- Describe the role of data, aesthetics, geoms, and layers in ggplot functions.
- Customize plot scales, titles, subtitles, themes, fonts, layout, and orientation.

Scientific topics: Transcriptomics

Keywords: transcriptomics, interactive-tools

Resource type: hands-on tutorial

Hands-on for 'Introduction to Machine Learning using R' tutorial

The questions this addresses are:
- What are the main categories in Machine Learning algorithms?
- How can I perform exploratory data analysis?
- What are the main part of a clustering process?
- How can a create a decision tree?
- How can I assess a linear regression model?

The...

Scientific topics: Statistics and probability

Keywords: statistics, interactive-tools

Resource type: hands-on tutorial

Hands-on for 'Variant Calling Workflow' tutorial

The questions this addresses are:
- How do I find sequence variants between my sample and a reference genome?

The objectives are:
- Understand the steps involved in variant calling.
- Describe the types of data formats encountered during variant calling.
- Use command line tools to perform...

Keywords: data-science

Resource type: hands-on tutorial

Hands-on for 'Plotting in Python' tutorial

The questions this addresses are:
- How can I create plots using Python in Galaxy?

The objectives are:
- Use the scientific library matplolib to explore tabular datasets

Keywords: data-science, jupyter-notebook

Resource type: hands-on tutorial

Hands-on for 'Advanced R in Galaxy' tutorial

The questions this addresses are:
- How can I manipulate data using R in Galaxy?
- How do I get started with tabular data from Galaxy in R?

The objectives are:
- Be able to load and explore the shape and contents of a tabular dataset using base R functions.
- Understand factors and how...

Keywords: data-science, R

Resource type: hands-on tutorial

Hands-on for 'Introduction to Python' tutorial

The questions this addresses are:
- How can I run Python programs?

The objectives are:
- Learn the fundamentals of programming in Python

Keywords: data-science, jupyter-notebook

Resource type: hands-on tutorial

Hands-on for 'Advanced Python' tutorial

The questions this addresses are:
- How can I analyze data using Python with Numpy and Pandas?

The objectives are:
- Use the scientific libraries pandas and numpy to explore tabular datasets
- Calculate basic statistics about datasets and columns

Keywords: data-science, jupyter-notebook

Resource type: hands-on tutorial

Hands-on for 'RStudio in Galaxy' tutorial

The questions this addresses are:
- How can I manipulate data using R in Galaxy?

The objectives are:
- Launch RStudio in Galaxy

Keywords: galaxy-interface, interactive-tools

Resource type: hands-on tutorial

DS Wizard and its Use

This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...

Scientific topics: Data management

Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data

Resource type: Presentation

A Gentle Introduction to DSW for Convergers

Data Stewardship Wizard brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...

Scientific topics: Data management, Data governance

Keywords: Data managment plan, data stewardship, data management, software tools

Resource type: Video, Slides, Webinar

Data Stewardship Wizard Workshop (Feb 2020)

Data Stewardship Wizard brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...

Scientific topics: Data governance, Data management

Keywords: Data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar, Slides