Register training material
9 materials found

Authors: Jan Slifka  or Emma Leith 


Hands-on for 'metaQuantome 3: Taxonomy' tutorial

The questions this addresses are:
- How do I look at differentially expressed taxa?
- Can we get top 5 or 10 taxa present in the sample?
- How can I visualize my results?

The objectives are:
- A taxonomy and quantitational analysis of metaproteomic mass spectrometry data.

Scientific topics: Proteomics

Keywords: proteomics, microbiome

Resource type: hands-on tutorial

Hands-on for 'metaQuantome 2: Function' tutorial

The questions this addresses are:
- How do I look at differentially expressed proteins?
- How do I get top 5 or 10 function present in the sample?
- How can I visualize my results?

The objectives are:
- A functional and quantitational analysis of metaproteomic mass spectrometry data.

Scientific topics: Proteomics

Keywords: proteomics, microbiome

Resource type: hands-on tutorial

Hands-on for 'metaQuantome 1: Data creation' tutorial

The questions this addresses are:
- How do I perform functional and taxonomy analysis on metaproteomics data?
- How can I perform quantitation on metaproteomics data?
- How do I create inputs that can be used in metaquantome to examine differentially expressed proteins?

The objectives are:
...

Scientific topics: Proteomics

Keywords: proteomics, microbiome

Resource type: hands-on tutorial

Hands-on for 'EncyclopeDIA' tutorial

The questions this addresses are:
- How to perform quantitative analysis using DIA data with the help of EncyclopeDIA?
- How to perform quantitation with or without Chromatogram Libraries?

The objectives are:
- Understand the difference between DDA and DIA methods
- Performing quantitative...

Scientific topics: Proteomics

Keywords: proteomics, DIA

Resource type: hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

The objectives are:
- Choose the best approach to analyze metatranscriptomics data
-...

Scientific topics: Metagenomics

Keywords: metagenomics, metatranscriptomics

Resource type: hands-on tutorial

Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial

The questions this addresses are:
- How to analyze metatranscriptomics data?"
- What information can be extracted of metatranscriptomics data?
- How to assign taxa and function to the identified sequences?

The objectives are:
- Choose the best approach to analyze metatranscriptomics data
...

Scientific topics: Metagenomics

Keywords: metagenomics, metatranscriptomics

Resource type: hands-on tutorial

DS Wizard and its Use

This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...

Scientific topics: Data management

Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data

Resource type: Presentation

A Gentle Introduction to DSW for Convergers

Data Stewardship Wizard brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...

Scientific topics: Data management, Data governance

Keywords: Data managment plan, data stewardship, data management, software tools

Resource type: Video, Slides, Webinar

Data Stewardship Wizard Workshop (Feb 2020)

Data Stewardship Wizard brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...

Scientific topics: Data governance, Data management

Keywords: Data management plan, data stewardship, FAIR, data management, software tools

Resource type: Video, Webinar, Slides